Publications of S Dunin-Horkawicz
All genres
Journal Article (34)
1.
Journal Article
33 (1), e4846 (2024)
AlphaFold2 captures the conformational landscape of the HAMP signaling domain. Protein Science 2.
Journal Article
14 (1), 7460 (2023)
Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts. Nature Communications 3.
Journal Article
39 (10), btad579 (2023)
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinformatics 4.
Journal Article
23 (1), bbab371 (2022)
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings in Bioinformatics 5.
Journal Article
17 (10), e1009502 (2021)
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PLoS Computational Biology 6.
Journal Article
21 (1), 32 (2021)
Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins. BMC Microbiology 7.
Journal Article
36 (22-23), pp. 5368 - 5376 (2020)
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinformatics 8.
Journal Article
21 (1), 179 (2020)
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinformatics 9.
Journal Article
15 (3), e0230366 (2020)
C8J_1298, a bifunctional thiol oxidoreductase of Campylobacter jejuni, affects Dsb (disulfide bond) network functioning. PLoS One 10.
Journal Article
35 (16), pp. 2790 - 2795 (2019)
DeepCoil: a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinformatics 11.
Journal Article
9, 6888 (2019)
PiPred: a deep-learning method for prediction of π-helices in protein sequences. Scientific Reports 12.
Journal Article
2019, bay148 (2019)
RRMdb: an evolutionary-oriented database of RNA recognition motif sequences. Database: The Journal of Biological Databases and Curation 13.
Journal Article
46 (D1), pp. D202 - D205 (2018)
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Nucleic Acids Research (London) 14.
Journal Article
107, pp. 34 - 41 (2016)
tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs. Methods 15.
Journal Article
427 (20), pp. 3327 - 3339 (2015)
STAC: A New Domain Associated with Transmembrane Solute Transport and Two-Component Signal Transduction Systems. Journal of Molecular Biology 16.
Journal Article
16, 336 (2015)
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. BMC Bioinformatics 17.
Journal Article
186 (3), pp. 349 - 356 (2014)
Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor. Journal of Structural Biology 18.
Journal Article
186 (3), pp. 357 - 366 (2014)
A soluble mutant of the transmembrane receptor Af1503 features strong changes in coiled-coil periodicity. Journal of Structural Biology 19.
Journal Article
426 (7), pp. 1568 - 1582 (2014)
Prokaryotic ancestry of eukaryotic protein networks mediating innate immunity and apoptosis. Journal of Molecular Biology 20.
Journal Article
41 (Database issue), pp. D262 - D267 (2013)
MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Research (London)