References
Rödelsperger, C., Ebbing, A., Sharma, D. R., Okumura, M., Sommer, R. J. & H. C. Korswagen (2021): Spatial transcriptomics of nematodes identifies sperm cells as a source of genomic novelty and rapid evolution. Mol. Biol. Evol., 38, 229-243.
Akduman, N., Rödelsperger, C. & Sommer, R.J. (2018): Culture-based analysis of Pristionchus-associated microbiota from beetles and figs for studying nematode-bacterial interactions. PLoS One. DOI: 10.1371/journal.pone.0198018.
Baskaran, P., Rödelsperger, C., Prabh, N., Serobyan, V., Markov, G. V., Hirsekorn, A. & Dieterich, C. (2015): Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus. BMC Evol Biology, DOI: 10.1186/s12862-015-0466-2.
Baskaran, P. & Rödelsperger, C. (2015): Microevolution of Duplications and Deletions and Their Impact on Gene Expression in the Nematode Pristionchus pacificus. PLoS One, DOI: 10.1371/journal.pone.0131136.
Baskaran, P., Jaleta, T.G., Streit, A. & Rödelsperger, C. (2017): Duplications and Positive Selection Drive the Evolution of Parasitism-Associated Gene Families in the Nematode Strongyloides papillosus. Genome Biol Evol. 9, 790-801. DOI: 10.1093/gbe/evx040.
Dieterich, C., Clifton, S.W., Schuster, L.N., Chinwalla, A., Delehaunty, K., Dinkelacker, I., Fulton, L., Fulton, R., Godfrey, J., Minx, P., Mitreva, M., Roeseler, W., Tian, H., Witte, H., Yang, S.P., Wilson, R.K. & Sommer, R.J. (2008): The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. Nat Genet. 40, 1193-8. DOI: 10.1038/ng.227.
Falcke. J.M., Bose, N., Artyukhin, A.B., Rödelsperger, C., Markov, G.V., Yim, J.J., Grimm, D., Claassen, M.H., Panda. O., Baccile, J.A., Zhang, Y.K., Le, H.H., Jolic, D., Schroeder, F.C., Sommer, R.J. (2018): Linking Genomic and Metabolomic Natural Variation Uncovers Nematode Pheromone Biosynthesis. Cell Chem Biol. 25: DOI: 10.1016/j.chembiol.2018.04.004.
Kieninger, M.R., Ivers, N.A., Rödelsperger, C., Markov, G.V., Sommer, R.J. & Ragsdale EJ (2016): The Nuclear Hormone Receptor NHR-40 Acts Downstream of the Sulfatase EUD-1 as Part of a Developmental Plasticity Switch in Pristionchus. Curr Biol. 26, 2174-9. DOI: 10.1016/j.cub.2016.06.018.
Lightfoot, J.W., Chauhan, V.M., Aylott, J.W. & Rödelsperger, C. (2016): Comparative transcriptomics of the nematode gut identifies global shifts in feeding mode and pathogen susceptibility. BMC Res Notes. 9:142, DOI: 10.1186/s13104-016-1886-9.
Mayer, M. G., Rödelsperger, C., Witte H., Riebesell, M. & Sommer, R. J. (2015): An orphan gene regulates intraspecific competition in nematodes by copy number variation. PLoS Genetics, 11, DOI: 10.1371/journal.pgen.1005146.
Markov, G.V., Meyer, J.M., Panda, O., Artyukhin, A.B., Claaßen, M., Witte, H., Schroeder, F.C. & Sommer, R.J. (2016): Functional Conservation and Divergence of daf-22 Paralogs in Pristionchus pacificus Dauer Development. Mol Biol Evol. 33, 2506-14. DOIi: 10.1093/molbev/msw090.
McGaughran, A., Rödelsperger, C., Grimm, D.G., Meyer, J.M., Moreno, E., Morgan, K., Leaver, M., Serobyan, V., Rakitsch, B., Borgwardt, K.M. & Sommer, R.J. (2016): Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages. Molecular Biology and Evolution, 33 (9):2257-72, DOI: 10.1093/molbev/msw093.
Meyer, J.M., Markov, G.V., Baskaran, P., Herrmann, M., Sommer, R.J., Rödelsperger, C. (2016): Draft Genome of the Scarab Beetle Oryctes borbonicus on La Réunion Island. Genome Biol Evol. 8(7):2093-105, DOI: 10.1093/gbe/evw133.
Meyer, J.M., Baskaran P., Quast C., Susoy V., Rödelsperger C., Glöckner F.O. & Sommer R.J. (2017): Succession and dynamics of Pristionchus nematodes and their microbiome during decomposition of Oryctes borbonicus on La Réunion Island. Environ Microbiol. 19, 1476-1489. DOI: 10.1111/1462-2920.13697.
Moreno, E., McGaughran, A., Rödelsperger, C., Zimmer, M. & Sommer, R.J. (2016): Oxygen-induced social behaviours in Pristionchus pacificus have a distinct evolutionary history and genetic regulation from Caenorhabditis elegans. Proc Biol Sci., 283, 20152263. DOI: 10.1098/rspb.2015.2263.
Moreno, E., Sieriebriennikov, B., Witte, H., Rödelsperger, C., Lightfoot, J.W. & Sommer, R.J. Regulation of hyperoxia-induced social behaviour in Pristionchus pacificus nematodes requires a novel cilia-mediated environmental input. Sci Rep. 7, 17550. DOI: 10.1038/s41598-017-18019-0.
Namdeo, S., Moreno, E., Rödelsperger, C., Baskaran. P,, Witte, H. & Sommer, R.J. (2018): Two independent sulfation processes regulate mouth-form plasticity in the nematode Pristionchus pacificus. Development. 145. DOI: 10.1242/dev.166272.
Prabh,N. & Rödelsperger, C. (2016): Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs? BMC Bioinformatics. 17, 226, DOI: 10.1186/s12859-016-1102-x.
Prabh, N. Röseler, W., Witte, H., Eberhardt, G., Sommer, R.J. & Rödelsperger C. 2018: Deep taxon sampling reveals the evolutionary dynamics of novel gene families in Pristionchus nematodes. Genome Research. DOI: 10.1101/gr.234971.118.
Rödelsperger, C., Streit, A., Sommer, R. J. (2013): Structure, function and evolution of the nematode genome. In: eLS. Chichester: John Wiley & Sons, Ltd., DOI: 10.1002/9780470015902.a0024603.
Rödelsperger, C., Neher, R. A., Weller, A., Eberhardt, G., Witte, H., Mayer, W., Dieterich, C. & Sommer, R. J. (2014): Characterization of genetic diversity in the nematode Pristionchus pacificus from population-scale resequencing data. Genetics, 196, 1153-1165.
Rödelsperger, C., Menden, K., Serobyan, V., Witte, H. & Baskaran, P. (2016): First insights into the nature and evolution of antisense transcription in nematodes. BMC Evol. Biol., 16: 165. DOI: 10.1186/s12862-016-0740-y
Rödelsperger, C., Meyer, J.M., Prabh, N., Lanz, C., Bemm, F. & Sommer, R.J. (2017): Single-Molecule Sequencing Reveals the Chromosome-Scale Genomic Architecture of the Nematode Model Organism Pristionchus pacificus. Cell Rep. 21, 834-844. DOI: 10.1016/j.celrep.2017.09.077.
Rödelsperger, C. (2018): Comparative Genomics of Gene Loss and Gain in Caenorhabditis and Other Nematodes. Methods Mol Biol. 1704, 419-432. DOI: 10.1007/978-1-4939-7463-4_16.
Rödelsperger, C., Röseler, W., Prabh, N., Yoshida K., Weiler C., Herrmann M. & Sommer R.J. (2018): Phylotranscriptomics of Pristionchus Nematodes Reveals Parallel Gene Loss in Six Hermaphroditic Lineages. Current Biology. 28. DOI: 10.1016/j.cub.2018.07.041
Sanghvi, G.V., Baskaran, P., Röseler, W., Sieriebriennikov, B., Rödelsperger, C., Sommer, R.J. (2016): Life History Responses and Gene Expression Profiles of the Nematode Pristionchus pacificus Cultured on Cryptococcus Yeasts. PLoS One. 11. DOI: 10.1371/journal.pone.0164881.
Serobyan, V., Xiao, H., Namdeo, S., Rödelsperger, C., Sieriebriennikov, B., Witte, H., Röseler, W. & Sommer, R.J. (2016): Chromatin remodelling and antisense-mediated up-regulation of the developmental switch gene eud-1 control predatory feeding plasticity. Nat Commun. 7, 12337. DOI: 10.1038/ncomms12337.
Sieriebriennikov, B., Prabh, N., Dardiry, M., Witte, H., Röseler, W., Kieninger, M.R., Rödelsperger, C. & Sommer, R.J. (2018): A Developmental Switch Generating Phenotypic Plasticity Is Part of a Conserved Multi-gene Locus. Cell Rep. 23, 2835-2843. DOI: 10.1016/j.celrep.2018.05.008.
Witte, H., Moreno, E., Rödelsperger, C., Kim, J., Kim, J.-S., Streit A. & Sommer, R. J. (2015): Gene inactivation using the CRISPR/Cas9 system in the nematode Pristionchus pacificus. Dev Genes & Evol., 225, 55-62.