Publications
_{Mobile genetic elements in the gut microbiome of human populations}

Ngwese, M.; Adegbite, B.; Zinsou, J.; Fitzstevens, J.; Schmidt, V.; Moure, A.; Maloum, M.; Tyakht, A.; Huus, K.; Youngblut, N. et al.; Kremsner, P.; Adegnika, A.; Ley, R.: Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa. Gut Microbes 17 (1), 2587966 (2025)

Suzuki, T.; Akbuğa-Schön, T.; Waters, J.; Jakob, D.; Vu, D.; Ballinger, M.; Di Rienzi, S.; Chang, H.; de Araujo, I.; Tyakht, A. et al.; Ley, R.: Selection and transmission of the gut microbiome alone can shift mammalian behavior. Nature Communications 16, 9482 (2025)

Dimore, A.; Kuplicki, R.; McDonald, D.; Kumar, M.; Estaki, M.; Youngblut, N.; Tyakht, A.; Ackermann, G.; Blach, C.; MahmoudianDehkordi, S. et al.; Dunlop, B.; Bhattacharyya, S.; Guinjoan, S.; Mandaviya, P.; Ley, R.; Kaddaruh-Dauok, R.; Paulus, M.; Knight, R.; Alzheimer Gut Microbiome Project Consortium: Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression. Molecular Psychiatry 30 (6), pp. 2545 - 2557 (2025)

Kiselev, V.; Košečkin, S.; Kurenkov, A.; Odincova, V.; Žiganova, M.; Tjacht, A.; Petrikov, S.; Jartsev, P.: Microbiome of the Initial Small Intestine in Patients With Severe Acute Pancreatitis: a Pilot Study. Žurnal im. I.V. Sklifosofskogo "Neotložnaja medicinskaja pomošč" 14 (1), pp. 132 - 140 (2025)

Khamidullina, A.; Yastrebova, M.; Bruter, A.; Nuzhina, J.; Vorobyeva, N.; Khrustaleva, A.; Varlamova, E.; Tyakht, A.; Abramenko, J.; Ivanova, E. et al.; Zamkova, M.; Li, J.; Lim, C.-U.; Chen, M.; Broude, E.; Roninson, I.; Shtil, A.; Tatarskiy, V.: CDK8/19 inhibition attenuates G1 arrest induced by BCR-ABL antagonists and accelerates death of chronic myelogenous leukemia cells. Cell Death Discovery 11, 62 (2025)

Sonets, I.; Dovidchenko, N.; Ulianov, S.; Yarina, M.; Koshechkin, S.; Razin, S.; Krasnopolskaya, L.; Tyakht, A.: Unraveling the Polysaccharide Biosynthesis Potential of Ganoderma lucidum: A Chromosome-Level Assembly Using Hi-C Sequencing. Journal of Fungi 9 (10), 1020 (2023)

Gavrilov, A.; Gevko, G.; Galitsyna, A.; Ulianov, S.; Kochetkova, T.; Merkel, A.; Tyakht, A.; Razin, S.: RNA-DNA interactomes of three prokaryotes uncovered by proximity ligation. Communications Biology 6 (1), 473 (2023)

Revel-Muroz, A.; Akulinin, M.; Shilova, P.; Tyakht, A.; Klimenko, M.: Stability of human gut microbiome: Comparison of ecological modelling and observational approaches. Computational and Structural Biotechnology Journal 21, pp. 4456 - 4468 (2023)

Klimenko, N.; Odintsova, V.; Revel-Muroz, A.; Tyakht, A.: The hallmarks of dietary intervention-resilient gut microbiome. npj Biofilms and Microbiomes 8 (1), 77 (2022)

Odintsova, V.; Klimenko, N.; Tyakht, A.: Approximation of a Microbiome Composition Shift by a Change in a Single Balance Between Two Groups of Taxa. mSystems 7 (3), e00155-22 (2022)

Ivanova, V.; Chernevskaya, E.; Vasiluev, P.; Ivanov, A.; Tolstoganov, I.; Shafranskaya, D.; Ulyantsev, V.; Korobeynikov , A.; Razin, S.; Beloborodova, N. et al.; Ulianov, S.; Tyakht, A.: Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients. Frontiers in Microbiology 12, 770323 (2022)

Klimenko, N.; Tyakht, A.; Popenko, A.; Vasiliev, A.; Altukhov, I.; Ischenko, D.; Shashkova, T.; Efimova, D.; Nikogosov, D.; Osipenko, D. et al.; Musienko, S.; Selezneva, K.; Baranova, A.; Kurilshikov, A.; Toshchakov, S.; Korzhenkov, A.; Samarov, N.; Shevchenko, M.; Tepliuk, A.; Alexeev, D.: Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project. Nutrients 10 (5), 576 (2018)

Tyakht, A.; Kostryukova, E.; Popenko, A.; Belenikin, M.; Pavlenko, A.; Larin, A.; Karpova, I.; Selezneva, O.; Semashko, T.; Ospanova, E. et al.; Babenko, V.; Maev, I.; Cheremushkin, S.; Kucheryavyy, Y.; Shcherbakov, P.; Grinevich, V.; Efimov, O.; Sas, E.; Abdulkhakov, R.; Abdulkhakov, S.; Lyalyukova, E.; Livzan, M.; Vlassov, V.; Sagdeev, R.; Tsukanov, V.; Osipenko, M.; Kozlova, I.; Tkachev, A.; Sergienko, V.; Alexeev, D.; Govorun, V.: Human gut microbiota community structures in urban and rural populations in Russia. Nature Communications 4, 2469 (2013)

Tyakht, A.: Balancing the microbes: compositional analysis of microbiome data. In Mini Symposium “Host-Microbe Interactions”. Mini Symposium “Host-Microbe Interactions”, Tübingen, Germany, July 10, 2025. (2025)

Huus, K.; μHEAT Clinical Study Group; Tan, Y.; Abo, H.; Keller, R.; Atay, E.; Dauser, S.; Vu, D.; Prokipchuk, A.; Tyakht, A. et al.; Youngblut, N.; Chassaing, B.; Kang, S.-M.; Parsonnet, J.; Kremsner, P.; Maier, L.; Gewirtz, A.; Esen, M.; Ley, R.: Flagellin in the human gut microbiome is a diet-adjustable adjuvant for vaccination. In 6th Novel Concepts in Innate Immunity, LT 6-1. 6th Novel Concepts in Innate Immunity, Tübingen, Germany, June 10, 2025 - June 13, 2025. (2025)

Huus, K.; Esen, M.; μ. Study Group; Dauser, S.; Loum, S.; Youngblut, N.; Tyakht, A.; Ley, R.: Vaccine-induced fevers are associated with diet and the gut microbiome. In 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), FT 14, p. 21. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany, October 11, 2023 - October 13, 2023. (2023)

Bogdanova, A.; Borbón, A.; Ley, R.; Tyakht, A.: Predicting flagellin-host interactions: insights from gut microbiome and IBD. 6th Novel Concepts in Innate Immunity, Tübingen, Germany (2025)

Fitzstevens, L.; Liu, X.; Ruaud, A.; Schmidt, V.; Mbong Ngwese, M.; Youngblut, N.; Rauch, J.; Suzuki, T.; Ha, N.; Arzamasov, A. et al.; Rodionov, D.; Pfister, N.; Thams, N.; Adegbite, B.; Zinsou, J.; Esen, M.; Velavan, T.; Adegnika, A.; Song, L.; Kremsner, P.; Ostermann, A.; Tyakht, A.; Ley, R.: Bifidobacteria compensate for genotype in lactose tolerance. 75th Mosbacher Kolloquium "The Microbiome - from Understanding to Modulation", Mosbach, Germany (2024)

Fitzstevens, L.; Liu, X.; Ruaud, A.; Schmidt, V.; Mbong, M.; Rauch, J.; Nguyen Thu, H.; Adegbite, B.; Zinsou, J.; Esen, M. et al.; Velavan, T.; Adegnika, A.; Song, L.; Kremsner, P.; Youngblut, N.; Tyakht, A.; Ley, R.: Bifidobacteria confer microbiome-acquired lactose tolerance in genetically lactase-non persistent humans. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)

Keller, R.; Dauser, S.; Tyakht, A.; Ley, R.: Predictive value of the gut microbiome in immunotherapy responses of hepatocellular carcinoma patients. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)