Publications
Conservation of Protein Structure and Function

Journal Article (24)

1.
Journal Article
Borbaran Bravo, N.; Deordieva, E.; Doll, L.; ElGamacy, M.; Dannenmann, B.; Azevedo, J.; Iannuzzo, A.; Delafontaine, S.; Lehnerz, M.; Kolodziej, M. et al.; Hernandez-Alvarez, B.; Hellmuth, A.-S.; Findik, B.; Zakharova, V.; Bräuning, S.; Kandabarau, S.; Lengerke, C.; Feil, R.; Meytz, I.; Delon, J.; Templin, M.; Sturm, M.; Rieß, O.; Zeidler, C.; Welte, K.; Shcherbina, A.; Klimiankou, M.; Skokowa, J.: A New Severe Congenital Neutropenia Syndrome Associated with Autosomal Recessive COPZ1 Mutations. Blood (accepted)
2.
Journal Article
Schwab, S.; Hu, Y.; van Erp, B.; Kajili, M.; Hartmann, M.; Hernandez-Alvarez, B.; Alva, V.; Boyle, A.; Dame, R.: Novel histones and histone variant families in prokaryotes. Nature Communications 15 (1), 7950 (2024)
3.
Journal Article
Hu, Y.; Schwab, S.; Deiss, S.; Escudeiro, P.; van Heesch, T.; Joiner, J.; Vreede, J.; Hartmann, M.; Lupas, A.; Hernandez Alvarez, B. et al.; Alva, V.; Dame, R.: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Nucleic Acids Research 52 (14), gkae485, pp. 8193 - 8204 (2024)
4.
Journal Article
Maksymenko, K.; Maurer, A.; Aghaallaei, N.; Barry, C.; Borbarán-Bravo, N.; Ullrich, T.; Dijkstra, T.; Hernandez-Alvarez, B.; Müller, P.; Lupas, A. et al.; Skokowa, J.; ElGamacy, M.: The design of functional proteins using tensorized energy calculations. Cell Reports Methods 3 (8), 100560 (2023)
5.
Journal Article
Skokowa, J.; Hernandez Alvarez, B.; Coles, M.; Ritter, M.; Nasri, M.; Haaf, J.; Aghaallaei, N.; Xu, Y.; Mir, P.; Krahl, A.-C. et al.; Rogers, K.; Maksymenko, K.; Bajoghli, B.; Welte, K.; Lupas, A.; Müller, P.; ElGamacy, M.: A topological refactoring design strategy yields highly stable granulopoietic proteins. Nature Communications 13 (1), 2948 (2022)
6.
Journal Article
Maiwald, S.; Heim, C.; Hernandez Alvarez, B.; Hartmann, M.: Correction to "Sweet and Blind Spots in E3 Ligase Ligand Space Revealed by a Thermophoresis-Based Assay". ACS Medicinal Chemistry Letters 13 (1), pp. 148 - 149 (2021)
7.
Journal Article
ElGamacy, M.; Hernandez Alvarez, B.: Expanding the versatility of natural and de novo designed coiled coils and helical bundles. Current Opinion in Structural Biology 68, pp. 224 - 234 (2021)
8.
Journal Article
Hernandez Alvarez, B.; Skokowa, J.; Coles, M.; Mir, P.; Nasri, M.; Weidmann, L.; Rogers, K.; Welte, K.; Lupas, A.; Müller, P. et al.; ElGamacy, M.: Design of novel granulopoietic proteins by topological rescaffolding. PLoS Biology 18 (12), e3000919 (2020)
9.
Journal Article
Maiwald, S.; Heim, C.; Hernandez Alvarez, B.; Hartmann, M.: Sweet and Blind Spots in E3 Ligase Ligand Space Revealed by a Thermophoresis-Based Assay. ACS Medicinal Chemistry Letters 12 (1), pp. 74 - 81 (2020)
10.
Journal Article
Heim, C.; Pliatsika, D.; Mousavizadeh, F.; Bär, K.; Hernandez Alvarez, B.; Giannis, A.; Hartmann, M.: De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. Journal of Medicinal Chemistry 62 (14), pp. 6615 - 6629 (2019)
11.
Journal Article
Hernandez Alvarez, B.; Bassler, J.; Lupas, A.: Structural diversity of coiled coils in protein fibers of the bacterial cell envelope. International Journal of Medical Microbiology 309 (5), pp. 351 - 358 (2019)
12.
Journal Article
Adlakha, J.; Karamichali, I.; Sangwallek, J.; Deiss, S.; Bär, K.; Coles, M.; Hartmann, M.; Lupas, A.; Hernandez Alvarez, B.: Characterization of MCU-Binding Proteins MCUR1 and CCDC90B - Representatives of a Protein Family Conserved in Prokaryotes and Eukaryotic Organelles. Structure 27 (3), pp. 464 - 475 (2019)
13.
Journal Article
Boichenko, I.; Bär, K.; Deiss, S.; Heim, C.; Albrecht, R.; Lupas, A.; Hernandez Alvarez, B.; Hartmann, M.: Chemical Ligand Space of Cereblon. ACS Omega 3 (9), pp. 11163 - 11171 (2018)
14.
Journal Article
Boichenko, I.; Deiss, S.; Bär, K.; Hartmann, M.; Hernandez Alvarez, B.: A FRET-Based Assay for the Identification and Characterization of Cereblon Ligands. Journal of Medicinal Chemistry 59 (2), pp. 770 - 774 (2016)
15.
Journal Article
Hartmann, M.; Mendler, C.; Bassler, J.; Karamichali, I.; Ridderbusch, O.; Lupas, A.; Hernandez Alvarez, B.: α/β coiled coils. eLife 5, e11861 (2016)
16.
Journal Article
Hartmann, M.; Boichenko, I.; Coles, M.; Lupas, A.; Hernandez Alvarez, B.: Structural dynamics of the cereblon ligand binding domain. PLoS One 10 (5), e0128342 (2015)
17.
Journal Article
Bassler, J.; Hernandez Alvarez, B.; Hartmann, M.; Lupas, A.: A domain dictionary of trimeric autotransporter adhesins. International Journal of Medical Microbiology 305 (2), pp. 265 - 275 (2015)
18.
Journal Article
Hartmann, M.; Boichenko, I.; Coles, M.; Zanini, F.; Lupas, A.; Hernandez Alvarez, B.: Thalidomide mimics uridine binding to an aromatic cage in cereblon. Journal of Structural Biology 188 (3), pp. 225 - 232 (2014)
19.
Journal Article
Deiss, S.; Hernandez Alvarez, B.; Bär, K.; Ewers, C.; Coles, M.; Albrecht, R.; Hartmann, M.: Your personalized protein structure: Andrei N. Lupas fused to GCN4 adaptors. Journal of Structural Biology 186 (3), pp. 380 - 385 (2014)
20.
Journal Article
Iatsenko, I.; Boichenko, I.; Sommer, R.: Bacillus thuringiensis DB27 produces two novel toxins, Cry21Fa1 and Cry21Ha1, which act synergistically against nematodes. Applied and Environmental Microbiology 80 (10), pp. 3266 - 3275 (2014)
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