Publications of B Schölkopf

Mineeva, O.; Danciu, D.; Schölkopf, B.; Ley, R.; Rätsch, G.; Youngblut, N.: ResMiCo: increasing the quality of metagenome-assembled genomes with deep learning. PLoS Computational Biology 19 (5), e1011001 (2023)

Kam-Thong, T.; Czamara, D.; Tsuda, K.; Borgwardt, K.; Lewis, C.; Erhardt-Lehmann , A.; Hemmer, B.; Rieckmann, P.; Daake, M.; Weber, F. et al.; Wolf, C.; Ziegler, A.; Pütz, B.; Holsboer , F.; Schölkopf, B.; Müller-Myhsok, B.: EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units. European Journal of Human Genetics 19 (4), pp. 465 - 471 (2011)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Widmer, C.; Widmer, C.; Naouar, N.; Vuylsteke, M.; Schölkopf, B.; Rätsch, G. et al.; Weigel, D.: At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. Genome Biology 9 (7), R112 (2008)

Clark, R.; Schweikert, G.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Chen, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Rätsch, G.; Ecker, J.; Weigel, D.: Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana. Science 317 (5836), pp. 338 - 342 (2007)

Rätsch, G.; Sonnenburg, S.; Srinivasan , J.; Witte, H.; Müller, K.-R.; Sommer, R.; Schölkopf, B.: Improving the Caenorhabditis elegans Genome Annotation Using Machine Learning. PLoS Computational Biology 3 (2 ), e20, pp. 0313 - 0322 (2007)

Schmid, M.; Davison, T.; Henz, S.; Pape, U.; Demar, M.; Vingron, M.; Schölkopf, B.; Weigel, D.; Lohmann, J.: A gene expression map of Arabidopsis thaliana development. Nature Genetics 37 (5), pp. 501 - 506 (2005)

Joubert, P.; Nickell, S.; Beck, F.; Habeck, M.; Hirsch, M.; Schölkopf, B.: Automatic particle picking using diffusion filtering and random forest classification. In: International Workshop on Microscopic Image Analysis with Application in Biology (MIAAB 2011). Sixth International Workshop on Microscopic Image Analysis with Application in Biology (MIAAB 2011), Heidelberg, Germany, September 02, 2011. (2011)

Langovoy, M.; Habeck, M.; Schölkopf, B.: Spatial statistics, image analysis and percolation theory. In: 2011 Joint Statistical Meetings (JSM). 2011 Joint Statistical Meetings (JSM), Miami Beach, FL, USA, July 30, 2011 - August 04, 2011. American Statistical Association, Alexandria, VA, USA (2011)

Langovoy, M.; Habeck, M.; Schölkopf, B.: Adaptive nonparametric detection in cryo-electron microscopy. In: 58th World Statistics Congress of the International Statistical Institute (ISI 2011). 58th World Statistics Congress of the International Statistical Institute (ISI 2011), Dublin, Ireland, August 21, 2011 - August 26, 2011. (2011)

Janzing, D.; Sgouritsa, E.; Stegle, O.; Peters, J.; Schölkopf, B.: Detecting low-complexity unobserved causes. In: 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), pp. 383 - 391. 27th Conference on Uncertainty in Artificial Intelligence (UAI 2011), Barcelona, Spain, July 14, 2011 - July 17, 2011. (2011)

Hirsch, M.; Schölkopf, B.; Habeck, M.: A New Algorithm for Improving the Resolution of Cryo-EM Density Maps. In: RECOMB 2010: Research in Computational Molecular Biology, pp. 174 - 188 (Ed. Berger, B.). 14th International Conference on Research in Computational Molecular Biology (RECOMB 2010), Lisboa, Portugal, April 25, 2010 - April 28, 2010. Springer, Berlin, Germany (2010)

Priebe, L.; Wolf, C.; Alexander, M.; Karbalai, N.; Fröhlich, H.; Stegle, O.; Kriegel, A.; Sander, T.; Czamara, D.; Mattheisen, M. et al.; Pütz, B.; Hillmer, A.; Altmann, A.; Kluck, N.; Schölkopf, B.; Borgwardt, K.; Schramm, J.; Hoffmann, P.; Becker, A.; Nöthen, M.; Müller-Myhsok, B.; Cichon, S.: Mapping genetic and epigenetic factors influencing human hippocampal gene expression. In European journal of human genetics, 20 (Supplement 1), C08-5, p. 27. European Human Genetics Conference (ESHG 2012), Nürnberg, Germany, June 23, 2012 - June 26, 2012. Nature Publishing Group (2012)

Rätsch, G.; Clark, L.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Cheng, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg , M.; Ecker, J.; Weigel, D.; Schneeberger, K.; Bohlen, A.: Discovering Common Sequence Variation in Arabidopsis thaliana. In 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008). 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Schmid, M.; Henz, S.; Davison, T.; Pape, U.; Vingron, M.; Schölkopf, B.; Weigel, D.; Lohmann, J.: AtGenExpress: Expression atlas of Arabidopsis Development. In 15th International Conference on Arabidopsis Research, T10-018, p. 485. 15th International Conference on Arabidopsis Research (ICAR 2004), Berlin, Germany, July 11, 2004 - July 14, 2004. Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany (2004)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Shin, P.; Frazer, K.; Ecker, J.; Weigel, D.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. NIPS 2007 Workshop on Machine Learning in Computational Biology (MLCB 2007), Whistler, Canada (2007)

Grimm, D.; Greshake, B.; Stegle, O.; Lippert, C.; Schölkopf, B.; Weigel, D.; Borgwardt, K.: easyGWAS: A central resource for efficient performance of genome-wide association studies. (2012)

Raetsch, G.; Rätsch, G.; Sonnenburg, S.; Srinivasan, J.; Müller, K.-R.; Sommer, R.; Schölkopf, B.: Splice Form Prediction using Machine Learning. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil (2006)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Warthmann, N.; Shinn, P.; Frazer, K.; Ecker, J.; Huson, D.; Weigel, D. et al.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. 14th International Conference on Intelligent Systems for Molecular Biology (ISMB 2006), Fortaleza, Brazil (2006)

Clark, R.; Ossowski, S.; Schweikert, G.; Zeller, G.; Shinn , P.; Rätsch, G.; Warthmann, N.; Fu, G.; Hinds, D.; Cheng, H. et al.; Frazer, K.; Toomajian, C.; Hu, T.; Huson, D.; Schölkopf, B.; Nordborg, M.; Ecker, J.; Weigel, D.: An Inventory of Common Sequence Polymorphisms for Arabidopsis. 17th International Conference on Arabidopsis Research (ICAR 2006), Madison, WI, USA (2006)

Schmid, M.; Davison, T.; Henz, S.; Pape, U.; Demar, M.; Vingron, M.; Schoelkopf, B.; Weigel, D.; Lohmann, J.: A gene expression map of Arabidopsis development. 16th International Conference on Arabidopsis Research (ICAR 2005), Madison, WI, USA (2005)