Publications of M Collenberg

Journal Article (5)

1.
Journal Article
Barragan, A.; Collenberg, M.; Schwab, R.; Kersten, S.; Kerstens, M.; Požárová, D.; Bezrukov, I.; Bemm, F.; Kolár, F.; Weigel, D.: Deleterious Phenotypes in Wild Arabidopsis arenosa Populations Are Common and Linked to Runs of Homozygosity. G3: Genes, Genomes, Genetics 14 (3), jkad290 (2024)
2.
Journal Article
Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandáková, T.; Gorringe, N.; Tock, A.; Holland, D. et al.; Fritschi, K.; Habring, A.; Lanz, C.; Patel, C.; Schlegel, T.; Collenberg, M.; Mielke, M.; Nordborg, M.; Roux, F.; Shirsekar, G.; Alonso-Blanco, C.; Lysak, M.; Novikova, P.; Bousios, A.; Weigel, D.; Henderson, I.: Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature 618 (7965), pp. 557 - 565 (2023)
3.
Journal Article
Wibowo, A.; Antunez-Sanchez, J.; Dawson, A.; Price, J.; Meehan, C.; Wrightsman, T.; Collenberg, M.; Bezrukov, I.; Becker, C.; Benhamed, M. et al.; Weigel, D.; Gutierrez-Marcos, J.: Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor. PLoS Genetics 18 (11), e1010479 (2022)
4.
Journal Article
Röseler, W.; Collenberg, M.; Yoshida, K.; Lanz, C.; Sommer, R.; Rödelsperger, C.: The improved genome of the nematode Parapristionchus giblindavisi provides insights into lineage-specific gene family evolution. G3: Genes, Genomes, Genetics 12 (10), jkac215 (2022)
5.
Journal Article
Barragan, A.; Collenberg, M.; Wang, J.; Lee, R.; Cher, W.; Rabanal, F.; Ashkenazy, H.; Weigel, D.; Chae, E.: A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana. Molecular Biology and Evolution 38 (2), pp. 557 - 574 (2021)

Meeting Abstract (6)

6.
Meeting Abstract
Murray, K.; Shirsekar, G.; Paul, F.; González-Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Karawounopoulos, S. et al.; Velthoven, R.; Lanz, C.; Collenberg, M.; The Pathodopsis Team; Weigel, D.: The Coevolutionary race between Hyaloperonospora Arabidopsidis and Arabidopsis Thaliana at a Transcontinental Scale. In 12th International Congress of Plant Pathology (ICPP 2023), C2.3-2, pp. 813 - 814. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)
7.
Meeting Abstract
Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Juettner, j.; Lanz, C.; Deusch, O. et al.; Fitz, J.; Mencia, R.; Velthoven, R.; Drost, H.-G.; Weigel, D.: Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System. In 12th International Congress of Plant Pathology (ICPP 2023), P5.5-010, p. 385. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)
8.
Meeting Abstract
Murray, K.; Shirsekar, G.; Paul, F.; González Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Marotz, A. et al.; Karawounopoulos, S.; Velthoven, R.; Lucke, M.; Lanz, C.; Collenberg, M.; Pathodopsis Team; Weigel, D.: The coevolutionary race between Hyaloperonospora arabidopsidis and Arabidopsis thaliana at a transcontinental scale. In SMBE 2023, p. 161. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)
9.
Meeting Abstract
Henderson, I.; Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandakova, T.; Gorringe, N.; Tock, A. et al.; Collenberg, M.; Mielke, M.; Shirsekar, G.; Alonso-Blanco, C.; Roux, F.; Lysak, M.; Novikov, P.; Nordborg, M.; Bousios, A.; Weigel, D.: Rapid cycles of satellite homogenization and retrotransposon invasion drive Arabidopsis pancentromere evolution. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-01. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)
10.
Meeting Abstract
Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras Garrido, A.; van Ess, L.; Juettner, j.; Lanz, C.; Fitz, J.; Drost, H.-G. et al.; Weigel, D.: Challenges of annotating complex genes in the Arabidopsis long read genome collection. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-06. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)
11.
Meeting Abstract
Shirsekar, G.; Murray, K.; Paul, F.; Schwab, R.; Tahtsidou, C.; Velthoven, R.; Deusch, O.; Teasdale, L.; Collenberg, M.; Pathodopsis Team et al.; Weigel, D.: Entangled co-evolutionary history of Hyaloperonospora arabidopsidis and its host Arabidopsis thaliana. In 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), 7.1, p. 35. 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), Brno, Czech Republic, August 22, 2022 - August 25, 2022. (2022)

Poster (3)

12.
Poster
Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2023), Providence, RI, USA (2023)
13.
Poster
Lucke, M.; Shirsekar, G.; Paul, F.; Collenberg, M.; Schlegel, T.; Schwab, R.; Weigel, D.: Linking resistance and effector genes in the Arabidopsis-Hyaloperonospora pathosystem. 32nd International Conference on Arabidopsis Research (ICAR 2022), Belfast, Ireland (2022)
14.
Poster
Collenberg, M.; Bemm, F.; Weigel, D.: Transcriptome Analysis in Hybrid Plants using Platinum Genomes. German Conference on Bioinformatics (GCB 2017), Tübingen, Germany (2017)

Thesis - PhD (1)

15.
Thesis - PhD
Collenberg, M.: Arabidopsis thaliana genome assemblies and their use in hybrid transcriptome analyses. Dissertation, 195 pp., Eberhard-Karls-Universität, Tübingen, Germany (2023)

Preprint (1)

16.
Preprint
Barragan, C.; Collenberg, M.; Schwab, R.; Kerstens, M.; Bezrukov, I.; Bemm, F.; Požárová, D.; Kolář, F.; Weigel, D.: Homozygosity at its Limit: Inbreeding Depression in Wild Arabidopsis arenosa Populations. (submitted)
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