Publications of G Shirsekar

Journal Article (7)

1.
Journal Article
Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandáková, T.; Gorringe, N.; Tock, A.; Holland, D. et al.; Fritschi, K.; Habring, A.; Lanz, C.; Patel, C.; Schlegel, T.; Collenberg, M.; Mielke, M.; Nordborg, M.; Roux, F.; Shirsekar, G.; Alonso-Blanco, C.; Lysak, M.; Novikova, P.; Bousios, A.; Weigel, D.; Henderson, I.: Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature 618 (7965), pp. 557 - 565 (2023)
2.
Journal Article
Shirsekar, G.; Devos, J.; Latorre, S.; Blaha, A.; Queiroz Dias, M.; González Hernando, A.; Lundberg, D.; Burbano, H.; Fenster, C.; Weigel, D.: Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia. Molecular Biology and Evolution 38 (12), pp. 5328 - 5344 (2021)
3.
Journal Article
Vogt, F.; Shirsekar, G.; Weigel, D.: vcf2gwas: python API for comprehensive GWAS analysis using GEMMA. Bioinformatics 38 (3), pp. 839 - 840 (2021)
4.
Journal Article
Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition. eLife 10, e66186 (2021)
5.
Journal Article
Karasov, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: What natural variation can teach us about resistance durability. Current Opinion in Plant Biology 56, pp. 89 - 98 (2020)
6.
Journal Article
Regalado, J.; Lundberg, D.; Deusch, O.; Kersten, S.; Karasov, T.; Poersch, K.; Shirsekar, G.; Weigel, D.: Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe-microbe interaction networks in plant leaves. The ISME Journal 14 (8), pp. 2116 - 2130 (2020)
7.
Journal Article
Weiß, C.; Schünemann, V.; Devos, J.; Shirsekar, G.; Reiter, E.; Gould, B.; Stinchcombe, J.; Krause, J.; Burbano, H.: Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens. Royal Society Open Science 3 (6), 160239 (2016)

Meeting Abstract (9)

8.
Meeting Abstract
Murray, K.; Shirsekar, G.; Paul, F.; González-Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Karawounopoulos, S. et al.; Velthoven, R.; Lanz, C.; Collenberg, M.; The Pathodopsis Team; Weigel, D.: The Coevolutionary race between Hyaloperonospora Arabidopsidis and Arabidopsis Thaliana at a Transcontinental Scale. In 12th International Congress of Plant Pathology (ICPP 2023), C2.3-2, pp. 813 - 814. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)
9.
Meeting Abstract
Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras-Garrido, A.; Schlegel, T.; van Ess, L.; Juettner, j.; Lanz, C.; Deusch, O. et al.; Fitz, J.; Mencia, R.; Velthoven, R.; Drost, H.-G.; Weigel, D.: Birth, Death, and Persistence in NLR Diversity in the Arabidopsis Immune System. In 12th International Congress of Plant Pathology (ICPP 2023), P5.5-010, p. 385. 12th International Congress of Plant Pathology (ICPP 2023), Lyon, France, August 20, 2023 - August 25, 2023. (2023)
10.
Meeting Abstract
Murray, K.; Shirsekar, G.; Paul, F.; González Hernando, A.; Schwab, R.; Tahtsidou, C.; Deusch, O.; Dürr, H.; Kontos, I.; Marotz, A. et al.; Karawounopoulos, S.; Velthoven, R.; Lucke, M.; Lanz, C.; Collenberg, M.; Pathodopsis Team; Weigel, D.: The coevolutionary race between Hyaloperonospora arabidopsidis and Arabidopsis thaliana at a transcontinental scale. In SMBE 2023, p. 161. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)
11.
Meeting Abstract
Henderson, I.; Wlodzimierz, P.; Rabanal, F.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandakova, T.; Gorringe, N.; Tock, A. et al.; Collenberg, M.; Mielke, M.; Shirsekar, G.; Alonso-Blanco, C.; Roux, F.; Lysak, M.; Novikov, P.; Nordborg, M.; Bousios, A.; Weigel, D.: Rapid cycles of satellite homogenization and retrotransposon invasion drive Arabidopsis pancentromere evolution. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-01. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)
12.
Meeting Abstract
Teasdale, L.; Shirsekar, G.; Collenberg, M.; Murray, K.; Contreras Garrido, A.; van Ess, L.; Juettner, j.; Lanz, C.; Fitz, J.; Drost, H.-G. et al.; Weigel, D.: Challenges of annotating complex genes in the Arabidopsis long read genome collection. In 33rd International Conference on Arabidopsis Research (ICAR 2023), WS02-06. 33rd International Conference on Arabidopsis Research (ICAR 2023), Chiba, Japan, June 05, 2023 - June 06, 2023. (2023)
13.
Meeting Abstract
Shirsekar, G.; Murray, K.; Paul, F.; Schwab, R.; Tahtsidou, C.; Velthoven, R.; Deusch, O.; Teasdale, L.; Collenberg, M.; Pathodopsis Team et al.; Weigel, D.: Entangled co-evolutionary history of Hyaloperonospora arabidopsidis and its host Arabidopsis thaliana. In 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), 7.1, p. 35. 21st Annual Meeting of the Oomycete Molecular Genetics Network (OMGN 2022), Brno, Czech Republic, August 22, 2022 - August 25, 2022. (2022)
14.
Meeting Abstract
Karasov, T.; Neumann, M.; Shirsekar, G.; Monroe, G.; Schwab, R.; Weigel, D.: Host and Environmental Drivers of Phyllosphere Composition across Europe. In Harnessing the Plant Microbiome: Virtual Conference, p. 36. Harnessing the Plant Microbiome: Virtual Conference, October 22, 2021 - October 24, 2021. (2021)
15.
Meeting Abstract
Lundberg, D.; Ayutthaya, P.; Strauß, A.; Shirsekar, G.; Lo, W.-S.; Lahaye, T.; Weigel, D.: Host-associated microbe PCR (hamPCR): accessing new biology through convenient measurement of both microbial load and community composition. In 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), p. 9. 1st International Student Conference on Biotechnology and Life Science (INSCOBIOL), Surabaya, Indonesia, June 21, 2021. (2021)
16.
Meeting Abstract
Bai, P.; Park, C.; Shirsekar, G.; Songkumarn, P.; Bellizzi, M.; Wang, G.: Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector and PAMP-triggered immunity. In APS Annual Meeting 2017, 66-O. APS Annual Meeting 2017, San Antonio, TX, USA, August 05, 2017 - August 09, 2017. (2017)

Poster (3)

17.
Poster
Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2023), Providence, RI, USA (2023)
18.
Poster
Lucke, M.; Shirsekar, G.; Paul, F.; Collenberg, M.; Schlegel, T.; Schwab, R.; Weigel, D.: Linking resistance and effector genes in the Arabidopsis-Hyaloperonospora pathosystem. 32nd International Conference on Arabidopsis Research (ICAR 2022), Belfast, Ireland (2022)
19.
Poster
Paul, F.; Shirsekar, G.; Schwab, R.; Tahtsidou, C.; Lucke, M.; P. Consortium, J.; Weigel, D.: Population genetics of Hyaloperonospora arabidopsidis (Hpa), a natural oomycete pathogen of Arabidopsis thaliana. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK (2019)

Preprint (4)

20.
Preprint
Tao, Y.; Xian, W.; Rabanal, F.; Movilli, A.; Lanz, C.; Shirsekar, G.; Weigel, D.: Atlas of telomeric repeat diversity in Arabidopsis thaliana. (submitted)
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