Publications of D Weigel

Smith, L.; Burbano, H.; Wang, X.; Fitz, J.; Wang, G.; Ural-Blimke, Y.; Weigel, D.: Rapid divergence and high diversity of miRNAs and miRNA targets in the Camelineae. The Plant Journal 81 (4), pp. 597 - 610 (2015)

Wang, C.; Liu, C.; Roquiero, D.; Grimm, D.; Schwab, R.; Becker, C.; Lanz, C.; Weigel, D.: Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. Genome Research 25 (2), pp. 246 - 256 (2015)

Willing, E.-M.; Rawat, V.; Mandakova, T.; Maumus, F.; James, G.; Nordstroem, K.; Becker, C.; Warthmann, N.; Chica, C.; Szarzynska, B. et al.; Zytnicki, M.; Albani, M.; Kiefer, C.; Bergonzi, S.; Castaings, L.; Mateos, J.; Berns, M.; Bujdoso, N.; Piofczyk, T.; de Lorenzo, L.; Barrero-Sicilia, C.; Mateos, I.; Piednoel, M.; Hagmann, J.; Chen-Min-Tao, R.; Iglesias-Fernandez, R.; Schuster, S.; Alonso-Blanco, C.; Roudier, F.; Carbonero, P.; Paz-Ares, J.; Davis, S.; Pecinka, A.; Quesneville, H.; Colot, V.; Lysak, M.; Weigel, D.; Coupland, G.; Schneeberger, K.: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1 (2), 14023 (2015)

Fraser, B.; Künstner, A.; Reznick, D.; Dreyer, C.; Weigel, D.: Population genomics of natural and experimental populations of guppies (Poecilia reticulata). Molecular Ecology 24 (2), pp. 389 - 408 (2015)

Hagmann, J.; Becker, C.; Müller, J.; Stegle, O.; Meyer, R.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLoS Genetics 11 (1), e1004920 (2015)

Weigel, D.; Nordborg, M.: Population Genomics for Understanding Adaptation in Wild Plant Species. Annual Review of Genetics 49, pp. 315 - 338 (2015)

Alcázar, R.; von Reth, M.; Bautor, J.; Chae, E.; Weigel, D.; Koornneef, M.; Parker, J.: Analysis of a Plant Complex Resistance Gene Locus Underlying Immune-Related Hybrid Incompatibility and Its Occurrence in Nature. PLoS Genetics 10 (12), e1004848 (2014)

Chae, E.; Bomblies, K.; Kim, S.-T.; Karelina, D.; Zaidem, M.; Ossowski, S.; Martín-Pizarro, C.; Laitinen, R.; Rowan, B.; Tenenboim, H. et al.; Lechner, S.; Demar, M.; Habring-Müller, A.; Lanz, C.; Rätsch, G.; Weigel, D.: Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis. Cell 159 (6), pp. 1341 - 1351 (2014)

Salomé, P.; Weigel, D.: Plant genetic archaeology: whole-genome sequencing reveals the pedigree of a classical trisomic line. G3: Genes, Genomes, Genetics 5 (2), pp. 253 - 259 (2014)

Lim, E.-C.; Müller, J.; Hagmann, J.; Henz, S.; Kim, S.-T.; Weigel, D.: Trowel: a fast and accurate error correction module for Illumina sequencing reads. Bioinformatics 30 (22), pp. 3264 - 3265 (2014)

Muralidharan, S.; Box, M.; Sedivy, E.; Wigge, P.; Weigel, D.; Rowan, B.: Different mechanisms for Arabidopsis thaliana hybrid necrosis cases inferred from temperature responses. Plant Biology 16 (6), pp. 1033 - 1041 (2014)

Rubio-Somoza, I.; Zhu, C.-M.; Confraria, A.; Martinho, C.; von Born, P.; Wang, J.-W.; Weigel, D.: Temporal control of leaf complexity by miRNA-regulated licensing of protein complexes. Current Biology 24 (22), pp. 2714 - 2719 (2014)

Seymour, D.; Koenig, D.; Hagmann, J.; Becker, C.; Weigel, D.: Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization. PLoS Genetics 10 (11), e1004785 (2014)

Heyndrickx, K.; Van de Velde, J.; Wang, C.; Weigel, D.; Vandepoele, k.: A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. Plant Cell 26 (10), pp. 3894 - 3910 (2014)

Bolger, A.; Scossa, F.; Bolger, M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S.; Schijlen, E.; Jimenez-Gomez, J.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L.; Maloof, J.; Sinha, N.; van Ham, R.; Lankhorst, R.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J.; Zamir, D.; Carrari, F.; Giovannoni, J.; Weigel, D.; Usadel, B.; Fernie, A.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)

Köster, T.; Meyer, K.; Weinholdt, C.; Smith, L.; Lummer, M.; Speth, C.; Grosse, I.; Weigel, D.; Staiger, D.: Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis. Nucleic Acids Research (London) 42 (15), pp. 9925 - 9936 (2014)

Weßling, R.; Epple, P.; Altmann, S.; He, Y.; Yang, L.; Henz, S.; McDonald, N.; Wiley, K.; Bader, K.; Glässer, C. et al.; Mukhtar, M.; Haigis, S.; Ghamsari, L.; Stephens, A.; Ecker, J.; Vidal, M.; Jones, J.; Mayer, K.; Ver Loren van Themaat, E.; Weigel, D.; Schulze-Lefert, P.; Dangl, J.; Panstruga, R.; Braun, P.: Convergent Targeting of a Common Host Protein-Network by Pathogen Effectors from Three Kingdoms of Life. Cell Host & Microbe 16 (3), pp. 364 - 375 (2014)

Dettmer, J.; Ursache, R.; Campilho, A.; Miyashima, S.; Belevich, I.; O'Regan, S.; Mullendore, D.; Yadav, S.; Lanz, C.; Beverina, L. et al.; Papagni, A.; Schneeberger, K.; Weigel, D.; Stierhof, Y.-D.; Moritz, T.; Knoblauch, M.; Jokitalo, E.; Helariutta, Y.: CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. Nature Communications 5, 4276 (2014)

Dinh, T.; Gao, L.; Liu, X.; Li, S.; Zhao, Y.; O'Leary, M.; Le, B.; Schmitz, R.; Manavella, P.; Li, S. et al.; Weigel, D.; Pontes, O.; Ecker, J.; Chen, X.: DNA topoisomerase 1α promotes transcriptional silencing of transposable elements through DNA methylation and histone lysine 9 dimethylation in Arabidopsis. PLoS Genetics 10 (7), e1004446 (2014)

Todesco, M.; Kim, S.-T.; Chae, E.; Bomblies, K.; Zaidem, M.; Smith, L.; Weigel, D.; Laitinen, R.: Activation of the Arabidopsis thaliana Immune System by Combinations of Common ACD6 Alleles. PLoS Genetics 10 (7), e1004459 (2014)