Publications of C Bağci

Gautam, A.; Felderhoof, H.; Bağci, C.; Huson, D.: Using AnnoTree to Get More Assignments, Faster, in DIAMOND+MEGAN Microbiome Analysis. mSystems 7 (1), e0140821 (2022)

Esquivel-Elizondo, S.; Bağci, C.; Temovska, M.; Jeon, B.; Bessarab, I.; Williams, R.; Huson, D.; Angenent, L.: The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria. Frontiers in Microbiology 11, 33584563 (2021)

Arumugam, K.; Bağci, C.; Bessarab, I.; Beier, S.; Buchfink, B.; Górska, A.; Qiu, G.; Huson, D.; Williams, R.: Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. Microbiome 7, 61 (2019)

Huson, D.; Albrecht, B.; Bağci, C.; Bessarab, I.; Górska, A.; Jolic, D.; Williams , R.: MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs. Biology Direct 13, 6 (2018)

Bağci, C.; Abrecht, B.; Huson, D.: MAIRA: Protein-based Analysis of MinION Reads on a Laptop. In: Metagenomic Data Analysis, pp. 223 - 234 (Ed. Mitra, S.). Humana Press, NewYork, NY, USA (2023)

Bağci, C.; Beier, S.; Górska, A.; Huson, D.: ntroduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN. In: Evolutionary Genomics: Statistical and Computational Methods, pp. 591 - 604. Humana Press, New York, NY, USA (2019)

Albrecht, B.; Bağci, C.; Huson, D.: MAIRA: real-time taxonomic and functional analysis of long reads on a laptop. In BMC Bioinformatics, 21 (Supplement 13), 390. 18th Asia Pacific Bioinformatics Conference (APBC 2020), Seoul, South Korea, August 18, 2020 - August 20, 2020. BioMed Central (2020)

Bagci, C.: Efficient Algorithms and Pipelines for Microbiome Analysis. Dissertation, Eberhard-Karls-Universität, Tübingen, Germany (2023)