Publications of H Ashkenazy

Journal Article (8)

1.
Journal Article
Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Nature Biotechnology Epub ahead (2023)
2.
Journal Article
Shalev, O.; Ashkenazy, H.; Neumann, M.; Weigel, D.: Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms. The ISME Journal 16 (5), pp. 1235 - 1244 (2022)
3.
Journal Article
Shalev, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Ayutthaya, P.; Weigel, D.: Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nature Ecology & Evolution 6 (4), pp. 383 - 396 (2022)
4.
Journal Article
Bernhofer, M.; Dallago, C.; Karl, T.; Satagopam, V.; Heinzinger, M.; Littmann, M.; Olenyi, T.; Qiu, J.; Schütze, K.; Yachdav, G. et al.; Ashkenazy, H.; Ben-Tal, N.; Bromberg, Y.; Goldberg, T.; Kajan, L.; O'Donoghue, S.; Sander, C.; Schafferhans, A.; Schlessinger, A.; Vriend, G.; Mirdita, M.; Gawron, P.; Gu, W.; Jarosz, Y.; Trefois, C.; Steinegger, M.; Schneider, R.; Rost, R.: PredictProtein: Predicting Protein Structure and Function for 29 Years. Nucleic Acids Research 49 (W1), pp. W535 - W540 (2021)
5.
Journal Article
Katz, E.; Li, J.-J.; Jaegle, B.; Ashkenazy, H.; Abrahams, S.; Bagaza, C.; Holden, S.; Pires, C.; Angelovici, R.; Kliebenstein, D.: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife 10, e67784 (2021)
6.
Journal Article
Hada-Neeman, S.; Weiss-Ottolenghi, Y.; Wagner, N.; Avram, O.; Ashkenazy, H.; Maor, Y.; Sklan, E.; Shcherbakov, D.; Pupko, T.; Gershoni, J.: Domain-Scan: Combinatorial Sero-Diagnosis of Infectious Diseases Using Machine Learning. Frontiers in immunology 11, 619896 (2021)
7.
Journal Article
Barragan, A.; Collenberg, M.; Wang, J.; Lee, R.; Cher, W.; Rabanal, F.; Ashkenazy, H.; Weigel, D.; Chae, E.: A Truncated Singleton NLR Causes Hybrid Necrosis in Arabidopsis thaliana. Molecular Biology and Evolution 38 (2), pp. 557 - 574 (2021)
8.
Journal Article
Chorin, A.; Masrati, G.; Kessel, A.; Narunsky, A.; Sprinzak, J.; Lahav, S.; Ashkenazy, H.; Ben-Tal, N.: ConSurf-DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins. Protein Science 29 (1), pp. 258 - 267 (2020)

Meeting Abstract (5)

9.
Meeting Abstract
Ashkenazy, H.; Shalev, O.; Karasov, T.; Neumann, M.; Weigel, D.: The evolution of Arabidopsis thaliana-associated Pseudomonas. In The Local Pangenome, 33, p. 81. The Local Pangenome, Alicante, Spain, October 25, 2023 - October 28, 2023. (2023)
10.
Meeting Abstract
Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics. In Plant & Animal Genome Conference (PAG 30). Plant & Animal Genome Conference (PAG 30), San Diego, CA, USA, January 13, 2023 - January 18, 2023. (2023)
11.
Meeting Abstract
Katz, E.; Li, J.-J.; Ashkenazy, H.; Bagaza, C.; Holden, S.; Angelovici, R.; Kliebenstein, D.: Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. In 31st International Conference on Arabidopsis Research (ICAR 2021), p. 17. 31st International Conference on Arabidopsis Research (ICAR 2021), June 21, 2021 - June 25, 2021. (2021)
12.
Meeting Abstract
Saarenpää, S.; Shalev Skriptchak, O.; Ashkenazy, H.; Weigel, D.; Giacomello, S.: Unveiling spatial host-microbe interactions in Arabidopsis thaliana leaves by Spatial MetaTranscriptomics. In 31st International Conference on Arabidopsis Research (ICAR 2021), pp. 65 - 66. 31st International Conference on Arabidopsis Research (ICAR 2021), June 21, 2021 - June 25, 2021. (2021)
13.
Meeting Abstract
Karasov, T.; Neumann, M.; Duque, A.; Ashkenazy, H.; Weigel, D.: From the Microbiome to the Gene: Mapping the genes in a leaf microbiome responsible for strain-specific pathogenicity. In Molecular Plant-Microbe Interactions, 32 (10S), p. S1.238. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK, July 14, 2019 - July 18, 2019. APS Press, St. Paul, MN, USA (2019)

Poster (7)

14.
Poster
Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatial Metatranscriptomics Resolves Host–Bacteria–Fungi Interactomes. Plant and Animal Genome 31 Conference (PAG 2024), San Diego, CA, USA (2024)
15.
Poster
Saarenpää, S.; Shalev, O.; Ashkenazy, H.; de Oliveira-Carlos, V.; Lundberg, D.; Weigel, D.; Giacomello, S.: Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics. 3rd International Conference Controlling Microbes to Fight Infections (CMFI 2023), Tübingen, Germany (2023)
16.
Poster
Lucke, M.; Ashkenazy, H.; Teasdale, L.; Paul, F.; Collenberg, M.; Schlegel, T.; Shirsekar, G.; Schwab, R.; Weigel, D.: On the relationship between alleles of the immune receptor RPP1 and its oomycete effector ligand ATR1. Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2023), Providence, RI, USA (2023)
17.
Poster
Saarenpää, S.; Shalev, O.; Ashkenazy, H.; Weigel, D.; Giacomello, S.: Harnessing Spatial Transcriptomics to Unveil Host-Microbe Interactions in Arabidopsis thaliana Leaves. Plant and Animal Genome XXIX Conference (PAG 2022), San Diego, CA, USA (2022)
18.
Poster
Ashkenazy, H.; Karasov, T.; Shalev Skriptchak, O.; Neumann, M.; Weigel, D.: The evolution of Arabidopsis thaliana-associated Pseudomonas. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK (2019)
19.
Poster
Shalev Skriptchak, O.; Karasov, T.; Lundberg, D.; Ashkenazy, H.; Weigel, D.: Host Genotype-dependent Interactions among Pathogenic and Commensal Pseudomonas Strains in A. thaliana. XVIII Congress of the International Society for Molecular Plant-Microbe Interactions (IS-MPMI 2019), Glasgow, UK (2019)
20.
Poster
Ashkenazy, H.; Karasov, T.; Shalev, O.; Neumann, M.; Weigel, D.: The evolution of Arabidopsis thaliana-associated Pseudomonas. Society for Molecular Biology and Evolution Conference 2019 (SMBE 2019), Manchester, UK (2019)
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