Publications
^{_{Microbiome Science}}

Barnett, S.; Youngblut, N.; Koechli, C.; Buckley, D.: Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling. Proceedings of the National Academy of Sciences of the United States of America 118 (47), e2115292118 (2021)

Di Rienzi, S.; Johnson, E.; Waters, J.; Kennedy, E.; Jacobson, J.; Lawrence, P.; Wang, D.; Worgall, T.; Brenna, J.; Ley, R.: The microbiome affects liver sphingolipids and plasma fatty acids in a murine model of the Western diet based on soybean oil. The Journal of Nutritional Biochemistry 97, 108808 (2021)

Youngblut, N.; Reischer, G.; Dauser, S.; Maisch, S.; Walzer, C.; Stalder, G.; Farnleitner, A.; Ley, R.: Vertebrate host phylogeny influences gut archaeal diversity. Nature Microbiology 6 (11), pp. 1443 - 1454 (2021)

Huus, K.; Ley, R.: Blowing Hot and Cold: Body Temperature and the Microbiome. mSystems 6 (5), e00707-21 (2021)

Youngblut, N.; Ley, R.: Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets. PeerJ 9, e12198 (2021)

Du, X.; Ley, R.; Buck, A.: MicroRNAs and extracellular vesicles in the gut: new host modulators of the microbiome? microLife 2, uqab010 (2021)

Moreno-Gallego, J.; Reyes, A.: Informative Regions In Viral Genomes. Viruses 13 (6), 1164 (2021)

Liu, X.; Sutter, J.; de la Cuesta-Zuluaga, J.; Waters, J.; Youngblut, N.; Ley, R.: Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis. International Journal of Systematic and Evolutionary Microbiology 71 (4), 004774 (2021)

Welter, D.; Ruaud, A.; Henseler, Z.; De Jong, H.; van Coeverden de Groot, P.; Michaux, J.; Gormezano, L.; Waters, J.; Youngblut, N.; Ley, R.: Free-Living, Psychrotrophic Bacteria of the Genus Psychrobacter Are Descendants of Pathobionts. mSystems 6 (2), e00258-21 (2021)

Sun, R.; Xu, Y.; Wu, Y.; Tang, J.; Esquivel-Elizondo, S.; Kerr, P.; Staddon, P.; Liu, J.: Functional sustainability of nutrient accumulation by periphytic biofilm under temperature fluctuations. Environmental Technology 42 (8), pp. 1145 - 1154 (2021)

de la Cuesta-Zuluaga, J.; Spector, T.; Youngblut, N.; Ley, R.: Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut. mSystems 6 (1), e00939-20 (2021)

Seo, B.; Jeon, J.; Baek, I.; Li, Y.; Baek, K.; Ko, G.: Clostridium fessum sp. nov., isolated from human faeces. International Journal of Systematic and Evolutionary Microbiology 17 (1), 004579 (2021)

Ley, R.: Cophylogeny Between Gut Microbiota and their Human Hosts. In World Microbe Forum 2021. World Microbe Forum 2021, June 22, 2021 - June 24, 2021. (2021)

Suzuki, T.; Fitzstevens, L.; Enav, H.; Schmidt, V.; Youngblut, N.; Mbong, M.; Ley, R.: Codiversification of the gut microbiota with humans. In Virtual Evolution 2021, 482. Virtual Evolution 2021, June 21, 2021 - June 25, 2021. (2021)

Heaver, S.: Sphingolipids in host-microbial interactions in the mammalian gut. In Annual Conference of the Microbiology Society 2021. Annual Conference of the Microbiology Society 2021, April 26, 2021 - April 30, 2021. (2021)

Suzuki, T.: Codiversification of gut microbiota with humans and the role of microbes in mammalian ecology and evolution. The Center for Ecological Research: CER Seminars, Kyoto, Japan (2021)

Frick, C.; Gruber, L.; Zundel, F; Heaver, S.; Ley, R.: Spatial lipid profiling of the gut commensal B. thetaiotaomicron in the mouse gut. OurCon2021: The International Mass Spectrometry Imaging Conference, Sheffield, UK (2021)

de la Cuesta, J.; Youngblut, N.; Escobar, J.; Ley, R.: Obesity Is the Main Driver of Functional Alterations of the Gut Microbiome in Cardiometabolic Disease. World Microbe Forum 2021 (2021)

Ruaud, A.; Pfister, N.; Ley, R.; Youngblut, N.: Interpretation of Tree Ensemble Machine Learning Models with EndoR. World Microbe Forum 2021 (2021)

Schön, T.; Ley, R.; Waters, J.: The Gut Microbe Christensenella minuta Increases Host Activity. World Microbe Forum 2021 (2021)