Publications
^{_{Microbiome Science}}

Enav, H.; Kirzer, S.; Lindell, D.; Mandel-Gutfreund, Y.; Béjà, o.: Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean. Nature Communications 9, 4698 (2018)

Tang, J.; Wu, Y.; Esquivel-Elizondo, S.; Sørensen, S.; Rittmann, B.: How Microbial Aggregates Protect against Nanoparticle Toxicity. Trends in Biotechnology 36 (11), pp. 1171 - 1182 (2018)

Korpela, K.; Salonen, A.; Vepsäläinen, O.; Suomalainen, M.; Kolmeder, C.; Varjosalo, M.; Miettinen, S.; Kukkonen, K.; Savilahti, W.; Kuitonen, M. et al.; de Vos, W.: Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants. Microbiome 6, 182 (2018)

Amaral-Zettler, L.; Schmidt, V.; Smith, K.: Microbial Community and Potential Pathogen Shifts Along an Ornamental Fish Supply Chain. Microorganisms 6 (3), 91 (2018)

de la Cuesta-Zuluaga, J.; Corrales-Agudelo, V.; Velásquez-Mejía, E.; Carmona, J.; Arbad, J.; Escobar, J.: Gut microbiota is associated with obesity and cardiometabolic disease in a population in the midst of Westernization. Scientific Reports 8, 11356 (2018)

Heaver, S.; Johnson, E.; Ley, R.: Sphingolipids in host-microbial interactions. Current Opinion in Microbiology 43, pp. 92 - 99 (2018)

Walters, W.; Jin, Z.; Youngblut, N.; Wallace, J.; Sutter, J.; Zhang, W.; González-Peña, A.; Peiffer, J.; Koren, O.; Shi, Q. et al.; Knight, R.; Glavina Del Rio, T.; Tringe, S.; Buckler, E.; Dangl, J.; Ley, R.: Large-scale replicated field study of maize rhizosphere identifies heritable microbes. Proceedings of the National Academy of Sciences of the United States of America 115 (28), pp. 7368 - 7373 (2018)

McDonald, D.; Hyde, E.; Debelius, J.; Morton, J.; Gonzalez, A.; Ackermann, G.; Aksenov, A.; Behsaz, B.; Brennan, C.; Chen, Y. et al.; DeRight Goldasich, L.; Dorrestein, P.; Dunn, R.; Fahimipour, A.; Gaffney, J.; Gilbert, J.; Gogul, G.; Green, J.; Hugenholtz, P.; Humphrey, G.; Huttenhower, C.; Jackson, M.; Janssen, S.; Jeste, D.; Jiang, L.; Kelley, S.; Knights, D.; Kosciolek, T.; Ladau, J.; Leach, J.; Marotz, C.; Meleshko, D.; Melnik, A.; Metcalf, J.; Mohimani, H.; Montassier, E.; Navas-Molina, J.; Nguyen, T.; Peddada, S.; Pevzner, P.; Pollard, K.; Rahnavard, G.; Robbins-Pianka, A.; Sangwan, N.; Shorenstein, J.; Smarr, L.; Song, S.; Spector, T.; Swafford, A.; Thackray, V.; Thompson, L.; Tripathi, A.; Vazquez-Baeza, Y.; Vrbanac, A.; Wischmeyer, P.; Wolfe, E.; Zhu, Q.; Knight, R.; Ley, R.: American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems 3 (3), e00031-18 (2018)

Costea, P.; Hildebrand, F.; Arumugam, M.; Backhed, F.; Blaser, M.; Bushman, F.; de Vos, W.; Ehrlich, S.; Fraser, C.; Hattori, M. et al.; Huttenhower, C.; Jeffery, I.; Knights, D.; Lewis, J.; Ley, R.; Ochman, H.; O'Toole, P.; Quince, C.; Relman, D.; Shanahan, F.; Sunagawa, S.; Wang, J.; Weinstock, G.; Wu, G.; Zeller, G.; Zhao, L.; Raes, J.; Knight, R.; Bork, P.: Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology 3 (3), p. 388 (2018)

Di Rienzi, S.; Jacobson, J.; Kennedy, E.; Bell, M.; Shi, Q.; Waters, J.; Lawrence, P.; Brenna, J.; Britton, R.; Walter, J. et al.; Ley, R.: Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids. eLife 7, e32581 (2018)

Velásquez-Mejía, E.; de la Cuesta-Zuluaga, J.; Escobar, J.: Impact of DNA extraction, sample dilution, and reagent contamination on 16S rRNA gene sequencing of human feces. Applied Microbiology and Biotechnology 102 (1), pp. 403 - 411 (2018)

Davenport, E.; Spector, T.; Ley, R.; Clark, A.: Simultaneously modeling host genetics and microbiome composition re- veals the heritability and the proportion of variance explained due to the microbiome of immune-related traits. In 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), 219, p. 110. 68th Annual Meeting of the American Society of Human Genetics (ASHG 2018), San Diego, CA, USA, October 16, 2018 - October 20, 2018. (2018)

Huus, K.: The Development of IgA-Lactobacillus Interactions Is Disrupted during Malnutrition and Environmental Enteropathy. Keystone Symposium: Microbiome, Host Resistance and Disease (X4), Banff, AB, Canada (2018)

Ley, R.: Sphingolipid Production by Gut Microbes Impacts Host Metabolism. Keystone Symposium: Microbiome, Host Resistance and Disease (X4), Banff, AB, Canada (2018)

Wallace, J.; Kremling, K.; Walters, W.; Lepak, N.; Ley, R.; Buckler, E.: The effects of host and environment on the maize microbiome. 60th Annual Maize Genetics Conference, Saint-Malo, France (2018)