Welter, D.; Ruaud, A.; Henseler, Z.; De Jong, H.; van Coeverden de Groot, P.; Michaux, J.; Gormezano, L.; Waters, J.; Youngblut, N.; Ley, R.: Free-living psychrophilic bacteria of the genus Psychrobacter are descendants of pathobionts. mSystems (accepted)

Suzuki, T.; Fitzstevens, J.; Schmidt, V.; Enav, H.; Huus, K.; Mbong Ngwese, M.; Grießhammer, A.; Pfleiderer, A.; Adegbite, B.; Zinsou, J. et al.; Esen, M.; Velavan, T.; Adegnika, A.; Song, L.; Spector, T.; Muehlbauer, A.; Marchi, N.; Kang, H.; Maier, L.; Blekhman, R.; Ségurel, L.; Ko, G.; Youngblut, N.; Kremsner, P.; Ley, R.: Codiversification of gut microbiota with humans. Science 377 (6612), pp. 1328 - 1332 (2022)

Youngblut, N.; de la Cuesta-Zuluaga, J.; Ley, R.: Incorporating genome-based phylogeny and functional similarity into diversity assessments helps to resolve a global collection of human gut metagenomes. Environmental Microbiology 24 (9), pp. 3966 - 3984 (2022)

Heaver, S.; He, H.; Tang, P.; Baslé, A.; Barone, C.; Vu, D.; Waters, J.; Marles-Wright, J.; Johnson, E.; Campopiano, D. et al.; Ley, R.: Characterization of inositol lipid metabolism in gut-associated Bacteroidetes. Nature Microbiology 7 (7), pp. 986 - 1000 (2022)

Andrade-Martínez, J.; Camelo Valera, L.; Chica Cárdenas , L.; Forero-Junco, L.; López-Leal, G.; Moreno-Gallego, J.; Rangel-Pineros, G.; Reyes, A.: Computational Tools for the Analysis of Uncultivated Phage Genomes. Microbiology and Molecular Biology Reviews 86 (2), e0000421 (2022)

Enav, H.; Bäckhed, F.; Ley, R.: The developing infant gut microbiome: A strain-level view. Cell Host & Microbe 30 (5), pp. 627 - 638 (2022)

Laloum, E.; Cattan-Tsaushu, E.; Schwartz, D.; Shaalan, H.; Enav, H.; Kolan, D.; Avrani, S.: Isolation and characterization of a novel Lambda-like phage infecting the bloom-forming cyanobacteria Cylindrospermopsis raciborskii. Environmental Microbiology 24 (5), pp. 2435 - 2448 (2022)

Chassaing, B.; Compher, C.; Bonhomme, B.; Liu, Q.; Tian, Y.; Walters, W.; Nessel, L.; Delaroque, C.; Hao, F.; Gershuni, V. et al.; Chau, L.; Ni, J.; Bewtra, M.; Albenberg, L.; Bretin, A.; McKeever, L.; Ley, R.; Patterson, A.; Wu, G.; Gewirtz, A.; Lewis, J.: Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome. Gastroenterology 162 (3), pp. 743 - 756 (2022)

Ataeian, M.; Liu, Y.; Kouris, A.; Hawley, A.; Strous, M.: Ecological Interactions of Cyanobacteria and Heterotrophs Enhances the Robustness of Cyanobacterial Consortium for Carbon Sequestration. Frontiers in Microbiology 13, 780346 (2022)

Beckman, E.; Martins, F.; Suzuki, T.; Bi, K.; Keeble, S.; Keeble, J.; Chavez, A.; Ballinger, M.; Agwamba, K.; Nachman, M.: The genomic basis of high-elevation adaptation in wild house mice (Mus musculus domesticus) from South America. Genetics 220 (2), iyab226 (2022)

Marsh, J.; Ley, R.: Microbiome engineering: Taming the untractable. Cell 185 (3), pp. 416 - 418 (2022)

Suzuki, T.; Ley, R.: Microbes set the (woodrat) menu: Host genetics control diet-specific gut microbes. Proceedings of the National Academy of Sciences of the United States of America 119 (2), e2120125118 (2022)

Wang, S.; Sun, P.; Zhang, G.; Grey, N.; Dolfing, J.; Esquivel-Elizondo, S.; Peñuelas, J.; Wu, Y.: Contribution of periphytic biofilm of paddy soils to carbon dioxide fixation and methane emissions. The Innovation 3 (1), 100192 (2022)

Barnett, S.; Youngblut, N.; Koechli, C.; Buckley, D.: Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling. Proceedings of the National Academy of Sciences of the United States of America 118 (47), e2115292118 (2021)

Di Rienzi, S.; Johnson, E.; Waters, J.; Kennedy, E.; Jacobson, J.; Lawrence, P.; Wang, D.; Worgall, T.; Brenna, J.; Ley, R.: The microbiome affects liver sphingolipids and plasma fatty acids in a murine model of the Western diet based on soybean oil. The Journal of Nutritional Biochemistry 97, 108808 (2021)

Youngblut, N.; Reischer, G.; Dauser, S.; Maisch, S.; Walzer, C.; Stalder, G.; Farnleitner, A.; Ley, R.: Vertebrate host phylogeny influences gut archaeal diversity. Nature Microbiology 6 (11), pp. 1443 - 1454 (2021)

Huus, K.; Ley, R.: Blowing Hot and Cold: Body Temperature and the Microbiome. mSystems 6 (5), e00707-21 (2021)

Youngblut, N.; Ley, R.: Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets. PeerJ 9, e12198 (2021)

Du, X.; Ley, R.; Buck, A.: MicroRNAs and extracellular vesicles in the gut: new host modulators of the microbiome? microLife 2, uqab010 (2021)

Moreno-Gallego, J.; Reyes, A.: Informative Regions In Viral Genomes. Viruses 13 (6), 1164 (2021)