Publications

S Ferguson, A Jones, K Murray, B Schwessinger, and JO Borevitz, "Interspecies genome divergence is predominantly due to frequent small scale rearrangements in Eucalyptus," Molecular Ecology 32 (6), 1271-1287 (2023).

B Jaegle, H Pisupati, LM Soto-Jiménez, R Burns, FA Rabanal, and M Nordborg, "Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity," Genome Biology 24 (1), 44 (2023).

SM Zozaya, LC Teasdale, LG Tedeschi, M Higgie, CJ Hoskin, and C Moritz, "Initiation of speciation across multiple dimensions in a rock-restricted, tropical lizard," Molecular Ecology 32 (3), 680-695 (2023).

S Schulze, L Yu, C Hua, L Zhang, D Kolb, H Weber, A Ehinger, SC Saile, M Stahl, M Franz-Wachtel, L Lei, F El Kasmi, T Nürnberger, V Cevik, and B Kemmerling, "The Arabidopsis TIR-NBS-LRR protein CSA1 guards BAK1-BIR3 homeostasis and mediates convergence of pattern- and effector-induced immune responses," Cell Host & Microbe 30 (12), 1717-1731 (2022).

AT Wibowo, J Antunez-Sanchez, A Dawson, J Price, C Meehan, T Wrightsman, M Collenberg, I Bezrukov, C Becker, M Benhamed, D Weigel, and J Gutierrez-Marcos, "Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor," PLoS Genetics 18 (11), e1010479 (2022).

V Zacharaki, J Ponnu, N Crepin, T Langenecker, J Hagmann, N Skorzinski, M Musialak-Lange, V Wahl, F Rolland, and M Schmid, "Impaired KIN10 function restores developmental defects in the Arabidopsis trehalose 6-phosphate synthase1 (tps1) mutant," New Phytologist 235 (1), 220-233 (2022).

SM Zozaya, LC Teasdale, C Moritz, M Higgie, and CJ Hoskin, "Composition of a chemical signalling trait varies with phylogeny and precipitation across an Australian lizard radiation," Journal of Evolutionary Biology 35 (7), 919-933 (2022).

A Nunn, I Rodríguez-Arévalo, Z Tandukar, K Frels, A Contreras-Garrido, P Carbonell-Bejerano, P Zhang, D Ramos Cruz, K Jandrasits, C Lanz, A Brusa, M Mirouze, K Dorn, DW Galbraith, BA Jarvis, JC Sedbrook, DL Wyse, C Otto, D Langenberger, PF Stadler, D Weigel, MD Marks, JA Anderson, C Becker, and A Chopra, "Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates," Plant Biotechnology Journal 20 (5), 944-963 (2022).

O Shalev, H Ashkenazy, M Neumann, and D Weigel, "Commensal Pseudomonas protect Arabidopsis thaliana from a coexisting pathogen via multiple lineage-dependent mechanisms," The ISME Journal 16 (5), 1235-1244 (2022).

MJ van der Zee, JR Whiting, JR Paris, JD Bassar, J Travis, D Weigel, DN Reznick, and BA Fraser, "Rapid genomic convergent evolution in experimental populations of Trinidadian guppies ( Poecilia reticulata)," Evolution Letters 6 (2), 149-161 (2022).

L Fan, K Fröhlich, E Melzer, RN Pruitt, I Albert, L Zhang, A Joe, C Hua, Y Song, M Albert, S-T Kim, D Weigel, C Zipfel, E Chae, AA Gust, and T Nürnberger, "Genotyping-by-sequencing-based identification of Arabidopsis pattern recognition receptor RLP32 recognizing proteobacterial translation initiation factor IF1," Nature Communications 13 (1), 1294 (2022).

G Shirsekar, J Devos, S Latorre, A Blaha, M Queiroz Dias, A González Hernando, DS Lundberg, HA Burbano, CB Fenster, and D Weigel, "Multiple Sources of Introduction of North American Arabidopsis thaliana from across Eurasia," Molecular Biology and Evolution 38 (12), 5328-5344 (2021).

J Tello, C Royo, E Baroja, E García-Escudero, JM Martínez-Zapater, and P Carbonell-Bejerano, "Reduced gamete viability associated to somatic genome rearrangements increases fruit set sensitivity to the environment in Tempranillo Blanco grapevine cultivar," Scientia Horticulturae 290, 110497 (2021).

E Cerruti, C Gisbert, H-G Drost, D Valentino, D Valentino, E Portis, L Barchi, J Prohens, S Lanteri, C Comino, and M Catoni, "Grafting vigour is associated with DNA de-methylation in eggplant," Horticulture Research 8 (1), 241 (2021).

JM Kreiner, PJ Tranel, D Weigel, JR Stinchcombe, and SI Wright, "The genetic architecture and population genomic signatures of glyphosate resistance in Amaranthus tuberculatus," Molecular Ecology 30 (21), 5373-5389 (2021).

RN Pruitt, F Locci, F Wanke, L Zhang, SC Saile, A Joe, D Karelina, C Hua, K Fröhlich, W-L Wan, M Hu, S Rao, SC Stolze, A Harzen, AA Gust, K Harter, MHAJ Joosten, BPHJ Thomma, J-M Zhou, JL Dangl, D Weigel, H Nakagami, C Oecking, FE Kasmi, JE Parker, and T Nürnberger, "The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity," Nature 598 (7881), 495-499 (2021).

J Sims, F Rabanal, C Elgert, A von Haeseler, and P Schlögelhofer, "It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis," Frontiers in Plant Science 12, 773052 (2021).

F Vogt, G Shirsekar, and D Weigel, "vcf2gwas: python API for comprehensive GWAS analysis using GEMMA," Bioinformatics 38 (3), 839-840 (2021).

L Lei and D Weigel, "One Hundred Years of Hybrid Necrosis: Hybrid Autoimmunity as a Window into the Mechanisms and Evolution of Plant-Pathogen Interactions," Annual Review of Phytopathology 59, 213-237 (2021).

I Moutsopoulos, L Maischak, E Lauzikaite, SA Vasquez Urbina, EC Williams, H-G Drost, and II Mohorianu, "noisyR: enhancing biological signal in sequencing datasets by characterizing random technical noise," Nucleic Acids Research 49 (14), e83 (2021).