Publications

Denoeud, F.; Godfroy, O.; Cruaud, C.; Heesch, S.; Nehr, Z.; Tadrent, N.; Couloux, A.; Brillet-Guéguen, L.; Delage, L.; Mckeown, D. et al.; Motomura, T.; Sussfeld, D.; Fan, X.; Mazéas, L.; Terrapon, N.; Barrera-Redondo, J.; Petroll, R.; Reynes, L.; Choi, S.-W.; Jo, J.; Uthanumallian, K.; Bogaert, K.; Duc, C.; Ratchinski, P.; Lipinska, A.; Noel, B.; Murphy, E.; Lohr, M.; Khatei, A.; Hamon-Giraud, P.; Vieira, C.; Avia, K.; Akerfors, S.; Akita, S.; Badis, Y.; Barbeyron, T.; Belcour, A.; Berrabah, W.; Blanquart, S.; Bouguerba-Collin, A.; Bringloe, T.; Cattolico, R.; Cormier, A.; Cruz de Carvalho, H.; Dallet, R.; De Clerck, O.; Debit, A.; Denis, E.; Destombe, C.; Dinatale, E.; Dittami, S.; Drula, E.; Faugeron, S.; Got, J.; Graf, L.; Groisillier, A.; Guillemin, M.-L.; Harms, L.; Hatchett, W.; Henrissat, B.; Hoarau, G.; Jollivet, C.; Jueterbock, A.; Kayal, E.; Knoll, A.; Kogame, K.; Le Bars, A.; Leblanc, C.; Le Gall, L.; Ley, R.; Liu, X.; LoDuca, S.; Lopez, P.; Lopez, P.; Manirakiza, E.; Massau, K.; Mauger, S.; Mest, L.; Michel, G.; Monteiro, C.; Nagasato, C.; Nègre, D.; Pelletier, E.; Phillips, N.; Potin, P.; Rensing, S.; Rousselot, E.; Rousvoal, S.; Schroeder, D.; Scornet, D.; Siegel, A.; Tirichine, L.; Tonon, T.; Valentin, K.; Verbruggen, H.; Weinberger, F.; Wheeler, G.; Kawai, H.; Peters, A.; Yoon, H.; Hervé, C.; Ye, N.; Bapteste, E.; Valero, M.; Markov, G.; Corre, E.; Coelho, S.; Wincker, P.; Aury, J.-M.; Cock, J.: Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems. Cell 187 (24), pp. 6943 - 6965 (2024)

Liu, P.; Vigneau, J.; Craig, R.; Barrera-Redondo, J.; Avdievich, E.; Martinho, C.; Borg, M.; Haas, F.; Liu, C.; Coelho, S.: 3D chromatin maps of a brown alga reveal U/V sex chromosome spatial organization. Nature Communications 15 (1), 9590 (2024)

Lotharukpong, J.; Zheng, M.; Luthringer, R.; Liesner, D.; Drost, H.-G.; Coelho, S.: A Transcriptomic Hourglass In Brown Algae. Nature 635 (8037), pp. 129 - 135 (2024)

Richards, T.; Eme, L.; Archibald, J.; Coelho, S.; de Mendoza, A.; Dessimoz, C.; Dolezal, P.; Fritz-Laylin, L.; Gabaldón, T.; Hampl, V. et al.; Kops, G.; Leger, M.; Lopez-Garcia, P.; McInerney, J.; Moreira, D.; Muñoz-Gómez, S.; Richter, D.; Ruiz-Trillo, I.; Santoro, A.; Sebé-Pedrós, A.; Snel, B.; Stairs , C.; Tromer, E.; van Hooff, J.; Wickstead, B.; Williams, T.; Rogers, A.; Dacks, J.; Wideman, J.: Reconstructing the last common ancestor of all eukaryotes. PLOS Biology 22 (11), e3002917 (2024)

Batista, R.; Wang, L.; Bogaert, K.; Coelho, S.: Insights into the molecular bases of multicellular development from brown algae. Development 151 (20), dev.203004 (2024)

Frohn, S.; Haas, F.; Chavez, B.; Dreyer, B.; Reiss, E.; Ziplys, A.; Weichert, H.; Hiltemann, S.; Ugalde, J.; Meyer, A. et al.; D'Auria, J.; Rensing, S.; Schippers, J.: Evolutionary conserved and divergent responses to copper zinc superoxide dismutase inhibition in plants. Plant, Cell and Environment Epub ahead (2024)

Hoshino, M.; Cossard, G.; Haas, F.; Kane, E.; Kogame, K.; Jomori, T.; Wakimoto, T.; Glemin, S.; Coelho, S.: Parallel loss of sexual reproduction in field populations of a brown alga sheds light on the mechanisms underlying the emergence of asexuality. Nature Ecology & Evolution 8 (10), pp. 1916 - 1932 (2024)

Mazéas, L.; Bouguerba-Collin, A.; Cock, J.; Denoeud, F.; Godfroy, O.; Brillet-Guéguen , L.; Barbeyron, T.; Lipinska, A.; Delage, L.; Corre, E. et al.; Drula, E.; Henrissat, B.; Czjzek, M.; Terrapon, N.; Hervé, C.: Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history. BMC Genomics 25 (1), 950 (2024)

Nozaki, H.; Yamamoto, K.; Takahashi, K.: Whole-genome sequencing analysis of volvocine green algae reveals the molecular genetic basis for the diversity and evolution of sex. Proceedings of the Japan Academy: Series B, Physical and biological sciences 100 (8), pp. 465 - 475 (2024)

Vigneau, J.; Martinho, C.; Godfroy, O.; Zheng, M.; Haas, F.; Borg, M.; Coelho, S.: Interactions between U and V sex chromosomes during the life cycle of Ectocarpus. Development 151 (20), dev202677 (2024)

Borg, M.: Red algae. Current Biology 34 (18), pp. R841 - R842 (2024)

Dries, E.; Meyers, Y.; Liesner, D.; Gonzaga, F.; Becker, J.; Zakka, E.; Coelho, S.; De Clerck, O.; Bogaert, K.: Cell wall-mediated maternal control of apical-basal patterning of the kelp Undaria pinnatifida. New Phytologist 243 (5), pp. 1887 - 1898 (2024)

Hoshino, M.; Tadokoro, S.; Akita, S.; Uwai, S.: Life cycle and molecular phylogeny of Vaucheria piloboloides (Vaucheriales, Xanthophyceae) from Sado Island, Japan. Phycological Research Epub ahead (2024)

Uthanumallian, K.; Del Cortona, A.; Coelho, S.; De Clerck, O.; Duchene, S.; Verbruggen, H.: Genome-wide patterns of selection-drift variation strongly associate with organismal traits across the green plant lineage. Genome Research 34 (8), pp. 1130 - 1139 (2024)

Hoshino, M.; Wakeman, K.; Kato, A.; Kitayama, T.; Sherwood, A.; Uwai, S.; Kogame, K.: Taxonomic study of the polyphyletic Dudresnaya (Dumontiaceae, Florideophyceae) with descriptions of Dudresnaya ryukyuensis sp. nov. and two new genera, Himehibirhodia and Nudresdaya. Phycological Research 72 (2), pp. 133 - 148 (2024)

Ohlsson, J.; Leong, J.; Elander, P.; Ballhaus, F.; Holla, S.; Dauphinee, A.; Johansson, J.; Lommel, M.; Hofmann, G.; Betnér, S. et al.; Sandgren, M.; Schumacher, K.; Bozhkov, P.; Minina, E.: SPIRO: the automated Petri plate imaging platform designed by biologists, for biologists. The Plant Journal 118 (2), pp. 584 - 600 (2024)

Coelho, S.: The brown seaweed Ectocarpus. Nature Methods 21 (3), pp. 363 - 364 (2024)

Luthringer, R.; Raphalen, M.; Guerra, C.; Colin, S.; Martinho, C.; Zheng, M.; Hoshino, M.; Badis, Y.; Lipinska, A.; Haas, F. et al.; Barrera-Redondo, J.; Alva, V.; Coelho, S.: Repeated co-option of HMG-box genes for sex determination in brown algae and animals. Science 283 (6689), eadk5466 (2024)

Bi, G.; Zhao, S.; Jao, J.; Wang, H.; Zhao, M.; Sun, Y.; Hou, X.; Haas, F.; Varshney, D.; Prigge, M. et al.; Rensing, S.; Jiao, Y.; Ma, Y.; Yan, J.; Dai, J.: Near telomere-to-telomere genome of the model plant Physcomitrium patens. Nature Plants 10 (2), pp. 327 - 343 (2024)

Bukhman, Y.; Meyer, S.; Chu, L.-F.; Abueg, L.; Antosiewicz-Bourget, J.; Balacco, J.; Brecht, M.; Dinatale, E.; Fedrigo, O.; Formenti, G. et al.; Fungtammasan, A.; Giri, S.; Hiller, M.; Howe, K.; Kihara, D.; Mammot, D.; Mountcastle , J.; Pelan, S.; Rabbani, K.; Sims, Y.; Tracey, A.; Wood, J.; Jarvis, E.; Thomson, J.; Chaisson, M.; Stewart, R.: Chromosome level genome assembly of the Etruscan shrew Suncus etruscus. Scientific Data 11 (1), 176 (2024)