Publications of RA Neher

Neher, R.: Genetic draft, selective interference, and population genetics of rapid adaptation. Annual Review of Ecology, Evolution, and Systematics 44, pp. 195 - 215 (2013)

Zanini, F.; Neher, R.: Quantifying selection against synonymous mutations in HIV-1 env evolution. Journal of Virology 87 (21), pp. 11843 - 11850 (2013)

Kessinger, T.; Perelson, A.; Neher, R.: Inferring HIV Escape Rates from Multi-Locus Genotype Data. Frontiers in immunology 4, 252 (2013)

Neher, R.; Kessinger, T.; Shraiman, B.: Coalescence and genetic diversity in sexual populations under selection. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. 15836 - 15841 (2013)

Ganusov, V.; Neher, R.; Perelson, A.: Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses. Journal of Statistical Mechanics: Theory and Experiment 2013, P01010 (2013)

Neher, R.; Hallatschek, O.: Genealogies of rapidly adapting populations. Proceedings of the National Academy of Sciences of the United States of America 110 (2), pp. 437 - 442 (2013)

Neher, R.; Vucelja, M.; Mezard, M.; Shraiman, B.: Emergence of clones in sexual populations. Journal of Statistical Mechanics: Theory and Experiment 2013, P01008 (2013)

Zanini, F.; Neher, R.: FFPopSim: an efficient forward simulation package for the evolution of large populations. Bioinformatics 28 (24), pp. 3332 - 3333 (2012)

Goyal, S.; Balick, D.; Jerison, E.; Neher, R.; Shraiman, B.; Desai, M.: Dynamic Mutation: Selection Balance as an Evolutionary Attractor. Genetics 191 (4), pp. 1309 - 1319 (2012)

Neher, R.; Shraiman, B.: Fluctuations of fitness distributions and the rate of Muller's ratchet. Genetics 191 (4), pp. 1283 - 1293 (2012)

Messer, P.; Neher, R.: Estimating the strength of selective sweeps from deep population diversity data. Genetics 191 (2), pp. 593 - 605 (2012)

Neher, R.; Shraiman, B.: Statistical genetics and evolution of quantitative traits. Reviews of Modern Physics 83, 1283 (2011)

Schötz, T.; Neher, R.; Gerland, U.: Target search on a dynamic DNA molecule. Physical Review E 84, 051911 (2011)

Neher, R.; Shraiman, B.: Genetic draft and quasi-neutrality in large facultatively sexual populations. Genetics 188 (4), pp. 975 - 996 (2011)

Callahan, B.; Neher, R.; Bachtrog, D.; Andolfatto, P.; Shraiman, B.: Correlated Evolution of Nearby Residues in Drosophilid Proteins. PLoS Genetics 7 (2), e1001315 (2011)

Neher, R.: Exploration of sequence space by HIV-1 populations. In SFB 680 Conference: Forecasting evolution?. SFB 680 Conference: Forecasting evolution?, Lisboa, Portugal, July 08, 2015 - July 11, 2015. (2015)

Neher, R.: Whole-Genome Deep Sequencing of Longitudinal Samples from HIV-1 Patients Followed from Early into Chronic Infection. In Workshop on Next Generation Sequencing of Viruses. Workshop on Next Generation Sequencing of Viruses, Paris, France, May 20, 2015 - May 21, 2015. (2015)

Kessinger, T.; Neher, R.: Quantifying the effect of selection on genealogies. In 47th Population Genetics Group Meeting (PopGroup 47), p. 20. 47th Population Genetics Group Meeting (PopGroup 47), Bath, UK, January 07, 2014 - January 10, 2014. (2014)

Neher, R.; Messer, P.: Detecting and characterizing sweeps using the frequency spectrum of rare haplotypes. In 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), p. 762. 13th Congress of the European Society for Evolutionary Biology (ESEB 2011), Tübingen, Germany, August 20, 2011 - August 25, 2011. (2011)

Neher, R.: Watching evolution happen. KITP Teachers' Conference: Physics and Biology: Evolution of Life and Evolution of Science, Santa Barbara, CA, USA (2011)