Publications of O Stegle
All genres
Journal Article (18)
1.
Journal Article
34 (2), pp. 211 - 224 (2018)
Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients. Cancer Cell 2.
Journal Article
21 (2), pp. 189 - 197 (2016)
GWAS for executive function and processing speed suggests involvement of the CADM2 gene. Molecular Psychiatry 3.
Journal Article
77 (8), pp. 749 - 763 (2015)
Genome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium. Biological Psychiatry 4.
Journal Article
11 (1), e1004920 (2015)
Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLoS Genetics 5.
Journal Article
26 (11), pp. 4298 - 4310 (2014)
Extensive cis-regulatory variation robust to environmental perturbation in Arabidopsis. Plant Cell 6.
Journal Article
29 (2), pp. 206 - 214 (2013)
LMM-Lasso: A Lasso Multi-Marker Mixed Model for Association Mapping with Population Structure Correction. Bioinformatics 7.
Journal Article
24 (9), pp. 3530 - 3557 (2012)
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell 8.
Journal Article
28 (7), pp. 1001 - 1008 (2012)
ShapePheno: Unsupervised extraction of shape phenotypes from biological image collections. Bioinformatics 9.
Journal Article
7 (3), pp. 500 - 507 (2012)
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses. Nature Protocols 10.
Journal Article
8 (1), e1002330 (2012)
Joint Modelling of Confounding Factors and Prominent Genetic Regulators Provides Increased Accuracy in Genetical Genomics Studies. PLoS Computational Biology 11.
Journal Article
480 (7376), pp. 245 - 249 (2011)
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 12.
Journal Article
43 (10), pp. 956 - 963 (2011)
Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 13.
Journal Article
477 (7365), pp. 419 - 423 (2011)
Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 14.
Journal Article
7 (1), e1001276 (2011)
Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes. PLoS Genetics 15.
Journal Article
17 (3), pp. 355 - 367 (2010)
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. Journal of Computational Biology 16.
Journal Article
2010 (2010)
Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Nature Precedings 17.
Journal Article
6 (5), e1000770 (2010)
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. PLoS Computational Biology 18.
Journal Article
2010, 564946 (2010)
A toolbox for predicting G-quadruplex formation and stability. Journal of Nucleic Acids Conference Paper (7)
19.
Conference Paper
Efficient inference in matrix-variate Gaussian models with iid observation noise. In: Advances in Neural Information Processing Systems 24, pp. 630 - 638 (Eds. Shawe-Taylor, J.; Zemel, R.; Bartlett, P.; Pereira, F.; Weinberger, K.). Twenty-Fifth Annual Conference on Neural Information Processing Systems (NIPS 2011), Granada, Spain, December 12, 2011 - December 17, 2011. Curran, Red Hook, NY, USA (2012)
20.
Conference Paper
Personalized medicine: from genotypes and molecular phenotypes towards computed therapy. In: Biocomputing 2012: Proceedings of the Pacific Symposium, pp. 323 - 326 (Eds. Altman, R.; Dunker, A.; Hunter, L.; Murray, T.; Klein, T.). Pacific Symposium on Biocomputing (PSB 2012), Kohala Coast, HI, USA, January 03, 2012 - January 07, 2012. World Scientific Publishing, Singapore (2012)