Publications of RE Ley

Poole, A.; Goodrich, J.; Youngblut, N.; Luque, G.; Ruaud, A.; Sutter, J.; Waters, J.; Shi, Q.; El-Hadidi, M.; Johnson, L. et al.; Bar, H.; Huson, D.; Booth, J.; Ley, R.: Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. Cell Host & Microbe 25 (4), pp. 553 - 564 (2019)

Moreno-Gallego, J.; Chou, S.-P.; Di Rienzi, S.; Goodrich, J.; Spector, T.; Bell, J.; Youngblut, N.; Hewson, I.; Reyes, A.; Ley, R.: Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host & Microbe 25 (2), pp. 261 - 272 (2019)

Alves da Silva, A.; de Castro Oliveira, S.; Di Rienzi, S.; Brown-Steinke, K.; Dehan, L.; Rood, J.; Carreira, V.; Le, H.; Maier, E.; Betz, K. et al.; Aihara, E.; Ley, R.; Preidis, G.; Shen, L.; Moore, S.: Murine Methyl Donor Deficiency Impairs Early Growth in Association with Dysmorphic Small Intestinal Crypts and Reduced Gut Microbial Community Diversity. Current Developments in Nutrition 3 (1), nzy070 (2019)

Heaver, S.; Johnson, E.; Ley, R.: Sphingolipids in host-microbial interactions. Current Opinion in Microbiology 43, pp. 92 - 99 (2018)

Walters, W.; Jin, Z.; Youngblut, N.; Wallace, J.; Sutter, J.; Zhang, W.; González-Peña, A.; Peiffer, J.; Koren, O.; Shi, Q. et al.; Knight, R.; Glavina Del Rio, T.; Tringe, S.; Buckler, E.; Dangl, J.; Ley, R.: Large-scale replicated field study of maize rhizosphere identifies heritable microbes. Proceedings of the National Academy of Sciences of the United States of America 115 (28), pp. 7368 - 7373 (2018)

McDonald, D.; Hyde, E.; Debelius, J.; Morton, J.; Gonzalez, A.; Ackermann, G.; Aksenov, A.; Behsaz, B.; Brennan, C.; Chen, Y. et al.; DeRight Goldasich, L.; Dorrestein, P.; Dunn, R.; Fahimipour, A.; Gaffney, J.; Gilbert, J.; Gogul, G.; Green, J.; Hugenholtz, P.; Humphrey, G.; Huttenhower, C.; Jackson, M.; Janssen, S.; Jeste, D.; Jiang, L.; Kelley, S.; Knights, D.; Kosciolek, T.; Ladau, J.; Leach, J.; Marotz, C.; Meleshko, D.; Melnik, A.; Metcalf, J.; Mohimani, H.; Montassier, E.; Navas-Molina, J.; Nguyen, T.; Peddada, S.; Pevzner, P.; Pollard, K.; Rahnavard, G.; Robbins-Pianka, A.; Sangwan, N.; Shorenstein, J.; Smarr, L.; Song, S.; Spector, T.; Swafford, A.; Thackray, V.; Thompson, L.; Tripathi, A.; Vazquez-Baeza, Y.; Vrbanac, A.; Wischmeyer, P.; Wolfe, E.; Zhu, Q.; Knight, R.; Ley, R.: American Gut: an Open Platform for Citizen Science Microbiome Research. mSystems 3 (3), e00031-18 (2018)

Costea, P.; Hildebrand, F.; Arumugam, M.; Backhed, F.; Blaser, M.; Bushman, F.; de Vos, W.; Ehrlich, S.; Fraser, C.; Hattori, M. et al.; Huttenhower, C.; Jeffery, I.; Knights, D.; Lewis, J.; Ley, R.; Ochman, H.; O'Toole, P.; Quince, C.; Relman, D.; Shanahan, F.; Sunagawa, S.; Wang, J.; Weinstock, G.; Wu, G.; Zeller, G.; Zhao, L.; Raes, J.; Knight, R.; Bork, P.: Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology 3 (3), p. 388 (2018)

Di Rienzi, S.; Jacobson, J.; Kennedy, E.; Bell, M.; Shi, Q.; Waters, J.; Lawrence, P.; Brenna, J.; Britton, R.; Walter, J. et al.; Ley, R.: Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids. eLife 7, e32581 (2018)

Costea, P.; Hildebrand, F.; Arumugam, M.; Backhed, F.; Blaser, M.; Bushman, F.; de Vos, W.; Ehrlich, S.; Fraser, C.; Hattori, M. et al.; Huttenhower, C.; Jeffery, I.; Knights, D.; Lewis, J.; Ley, R.; Ochman, H.; O'Toole, P.; Quince, C.; Relman, D.; Shanahan, F.; Sunagawa, S.; Wang, J.; Weinstock, G.; Wu, G.; Zeller, G.; Zhao, L.; Raes, J.; Knight, R.; Bork, P.: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology 3 (1), pp. 8 - 16 (2017)

Levy, A.; Salas Gonzalez, I.; Mittelviefhaus, M.; Clingenpeel, S.; Herrera Paredes, S.; Miao, J.; Wang, K.; Devescovi, G.; Stillman, K.; Monteiro, F. et al.; Rangel Alvarez, B.; Lundberg, D.; Lu, T.; Lebeis, S.; Jin, Z.; McDonald, M.; Klein, A.; Feltcher, M.; Rio, T.; Grant, S.; Doty, S.; Ley, R.; Zhao, B.; Venturi, V.; Pelletier, D.; Vorholt, J.; Tringe, S.; Woyke, T.; Dangl, J.: Genomic features of bacterial adaptation to plants. Nature Genetics 50 (1), pp. 138 - 150 (2017)

Goodrich, J.; Davenport, E.; Clark, A.; Ley, R.: The Relationship Between the Human Genome and Microbiome Comes into View. Annual Review of Genetics 51, pp. 413 - 433 (2017)

Guss, J.; Horsfield, M.; Fontenele, F.; Sandoval, T.; Luna, M.; Apoorva, F.; Lima, S.; Bicalho, R.; Singh, A.; Ley, R. et al.; van der Meulen, M.; Goldring, S.; Hernandez, C.: Alterations to the gut microbiome impaired bone strength and tissue material properties. Journal of Bone and Mineral Research 32 (6), pp. 1343 - 1353 (2017)

Guss, J.; Horsfield, M.; Fontenele, F.; Sandoval, T.; Luna, M.; Apoorva, F.; Lima, S.; Bicalho, R.; Singh, A.; Ley, R. et al.; van der Meulen, M.; Goldring, S.; Hernandez, C.: Alterations to the Gut Microbiome Impair Bone Strength and Tissue Material Properties. Journal of Bone and Mineral Research 32 (6), pp. 1343 - 1353 (2017)

McGavigan, A.; Henseler, Z.; Garibay, D.; Butler, S.; Jayasinghe, S.; Ley, R.; Davisson, R.; Cummings, B.: Vertical sleeve gastrectomy reduces blood pressure and hypothalamic endoplasmic reticulum stress in mice. Disease Models & Mechanisms 10 (3), pp. 235 - 243 (2017)

McGavigan, A.; Garibay, D.; Henseler, Z.; Chen, J.; Bettaieb, A.; Haj, F.; Ley, R.; Chouinard, M.; Cummings, B.: TGR5 contributes to glucoregulatory improvements after vertical sleeve gastrectomy in mice. Gut 66 (2), pp. 226 - 234 (2017)

Johnson, E.; Heaver, S.; Walters, W.; Ley, R.: Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes. Journal of Molecular Medicine 95 (1), pp. 1 - 8 (2017)

Ley, R.; Tissenbaum, H.; Klip, A.; Han, J.-D.; Coleman, R.; Akhtar, A.; Aouadi, M.; Anderson, R.; Randolph, G.; White, E.: Women in Metabolism: Part IV. Cell Metabolism 24 (6), pp. 767 - 770 (2016)

Davenport, E.; Goodrich, J.; Bell, J.; Spector, T.; Ley, R.; Clark, A.: ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins. BMC Genomics 17, 941 (2016)

Beaumont, M.; Goodrich, J.; Jackson, M.; Yet, I.; Davenport, E.; Vieira-Silva, S.; Debelius, J.; Pallister, T.; Mangino, M.; Raes, J. et al.; Knight, R.; Clark, A.; Ley, R.; Spector, T.; Bell, J.: Heritable components of the human fecal microbiome are associated with visceral fat. Genome Biology 17, 189 (2016)

Ley, R.; Gewirtz, A.: Corralling Colonic Flagellated Microbiota. The New England Journal of Medicine: NEJM / Publ. by the Massachusetts Medical Society 735 (1), pp. 85 - 87 (2016)