Publications of G Zeller

Eichner, J.; Zeller, G.; Laubinger, S.; Rätsch, G.: Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics 12, 55 (2011)

Spencer, W.; Zeller, G.; Watson, J.; Henz, S.; Watkins, K.; McWhirter, R.; Petersen, S.; Sreedharan, V.; Widmer, C.; Jo, J. et al.; Reinke, V.; Petrella, L.; Strohme, S.; Von Stetina, S.; Katz, M.; Shaham, S.; Rätsch, G.; Miller, D.: A spatial and temporal map of C. elegans gene expression. Genome Research 21 (2), pp. 325 - 341 (2011)

Hallem, E.; Spencer, W.; McWhirter, R.; Zeller, G.; Henz, S.; Rätsch, G.; Miller, D.; Horvitz, H.; Sternberg, P.; Ringstad, N.: Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America 108 (1), pp. 254 - 259 (2011)

Laubinger, S.; Zeller, G.; Henz, S.; Buechel, S.; Sachsenberg, T.; Wang, J.-W.; Rätsch, G.; Weigel, D.: Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America 107 (41), pp. 17466 - 17573 (2010)

Rehrauer, H.; Aquino, C.; Gruissem, W.; Henz, S.; Hilson, P.; Laubinger, S.; Naouar, N.; Patrignani , A.; Rombauts, S.; Shu, H. et al.; Van de Peer, Y.; Vuylsteke, M.; Weigel, D.; Zeller, G.; Hennig, L.: AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiology 152 (2), pp. 487 - 499 (2010)

Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A. et al.; Krüger, N.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), pp. 2133 - 2143 (2009)

McNally, K.; Childs, K.; Bohnert, R.; Davidson, R.; Zhao, K.; Ulat, V.; Zeller, G.; Clark, R.; Hoen, T.; Bureau, D. et al.; Stokowski, R.; Ballinger, D.; Frazer, K.; Cox, D.; Padhukasahasram, B.; Bustamante, C.; Weigel, D.; Mackill, D.; Bruskiewich, R.; Rätsch, G.; Buell, C.; Leung, H.; Leach, J.: Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America 106 (30), pp. 12273 - 12278 (2009)

Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C.; Sonnenburg, S.; Rätsch, G.: mGene.web: a web service for accurate computational gene finding. Nucleic Acids Research (London) 37 (Supplement 2), pp. W312 - W316 (2009)

Zeller, G.; Henz, S.; Widmer, C.; Sachsenberg, T.; Rätsch, G.; Weigel, D.; Laubinger, S.: Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays. The Plant Journal 58 (6), pp. 1068 - 1082 (2009)

Plantegenet, S.; Weber, S.; Goldstein, D.; Zeller, G.; Nussbaumer, C.; Thomas, J.; Weigel, D.; Harshman, K.; Hardtke, C.: Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Molecular Systems Biology 5, 242 (2009)

Naouar, N.; Vandepoele, K.; Lammens, T.; Casneuf, T.; Zeller, G.; van Hummelen, P.; Weigel, D.; Rätsch, G.; Inzé, D.; Kuiper, M. et al.; De Veylder, L.; Vuylsteke, M.: Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target. The Plant Journal 57 (1), pp. 184 - 194 (2009)

Naouar, N.; Vandepoele, K.; Lammens, T.; Casneuf, T.; Zeller, G.; van Hummelen, P.; Weigel, D.; Rätsch, G.; Inzé, D.; Kuiper, N. et al.; De Veylder, L.; Vuylsteke, M.: Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. The Plant Journal 57 (1), pp. 184 - 194 (2009)

Laubinger, S.; Zeller, G.; Henz, S.; Sachsenberg, T.; Widmer, C.; Widmer, C.; Naouar, N.; Vuylsteke, M.; Schölkopf, B.; Rätsch, G. et al.; Weigel, D.: At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. Genome Biology 9 (7), R112 (2008)

Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J.; Rätsch, G.; Weigel, D.: Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 105 (25), pp. 8795 - 8800 (2008)

Zeller, G.; Clark, R.; Schneeberger, K.; Bohlen, A.; Weigel, D.; Rätsch, G.: Detecting polymorphic regions in Arabidopsis thaliana with resequencing microarrays. Genome Research 18 (6), pp. 918 - 929 (2008)

Clark, R.; Schweikert, G.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Chen, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg, M.; Rätsch, G.; Ecker, J.; Weigel, D.: Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana. Science 317 (5836), pp. 338 - 342 (2007)

Zeller, G.; Henz, S.; Laubinger, S.; Weigel, D.; Rätsch, G.: Transcript normalization and segmentation of tiling array data. In: Pacific Symposium on Biocomputing (PSB 2008), pp. 527 - 538. Pacific Symposium on Biocomputing (PSB 2008), Fairmont Orchid, HI, USA, January 04, 2008 - January 08, 2008. (2008)

Bohnert, R.; Zeller, G.; Clark, R.; Childs, K.; Ulat, V.; Stokowski, R.; Ballinger , D.; Frazer, K.; Cox, D.; Bruskiewich, R. et al.; Buell, C.; Leach, J.; Leung, H.; McNally, K.; Weigel, D.; Rätsch, G.: Revealing sequence variation patterns in rice with machine learning methods. In BMC Bioinformatics, 9 (Supplement 10), O8. Fourth International Society for Computational Biology Student Council Symposium (ISCB 2008) , Toronto, Canada, July 18, 2008. BioMed Central (2008)

Rätsch, G.; Clark, L.; Toomajian, C.; Ossowski, S.; Zeller, G.; Shinn, P.; Warthmann, N.; Hu, T.; Fu, G.; Hinds, D. et al.; Cheng, H.; Frazer, K.; Huson, D.; Schölkopf, B.; Nordborg , M.; Ecker, J.; Weigel, D.; Schneeberger, K.; Bohlen, A.: Discovering Common Sequence Variation in Arabidopsis thaliana. In 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008). 16th Annual International Conference Intelligent Systems for Molecular Biology (ISMB 2008), Toronto, Canada, July 19, 2008 - July 23, 2008. (2008)

Zeller, G.; Schweikert, G.; Clark, R.; Ossowski, S.; Shin, P.; Frazer, K.; Ecker, J.; Weigel, D.; Schölkopf, B.; Rätsch, G.: Machine Learning Algorithms for Polymorphism Detection. NIPS 2007 Workshop on Machine Learning in Computational Biology (MLCB 2007), Whistler, Canada (2007)