Publications
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R Reifová , SL Ament-Velásquez, Y Bourgeois, J Coughlan, J Kulmuni, AP Lipinska, G Okude, L Stevison, K Yoshida, and J Kitano, "Mechanisms of Intrinsic Postzygotic Isolation: From Traditional Genic and Chromosomal Views to Genomic and Epigenetic Perspectives," Cold Spring Harbor Perspectives in Biology Epub ahead, a041607 (2023).

M Borg, SA Krueger-Hadfield, C Destombe, J Collén, A Lipinska, and SM Coelho, "Red macroalgae in the genomic era," New Phytologist Epub ahead (2023).

AP Lipinska, SA Krueger-Hadfield, O Godfroy, S Dittami, L Ayres-Ostrock, E Bonthond, L Brillet-Guéguen, S Coelho, E Corre, G Cossard, C Destombe, P Epperlein, S Faugeron, E Ficko-Blean, J Beltrán, E Lavaut, A Le Bars, F Marchi, S Mauger, G Michel, P Potin, D Scornet, EE Sotka, F Weinberger, M Cabral de Oliveira, M-L Guillemin, EM Plastino, and M Valero, "The Rhodoexplorer platform for red algal genomics and whole genome assemblies for several Gracilaria species," Genome Biology and Evolution 17 (7), evad124 (2023).

M Krasovec, M Hoshino, M Zheng, AP Lipinska, and SM Coelho, "Low spontaneous mutation rate in complex multicellular eukaryotes with a haploid-diploid life cycle," Molecular Biology and Evolution 40 (6), msad105 (2023).

WJ Hatchett, A Jueterbock, M Kopp, JA Coyer, SM Coelho, G Hoarau, and AP Lipinska, "Evolutionary dynamics of sex-biased gene expression in a young XY system: Insights from the brown alga genus Fucus," New Phytologist 238 (1), 422-437 (2023).

GG Cossard, O Godfroy, Z Nehr, C Cruaud, JM Cock, AP Lipinska, and SM Coelho, "Selection drives the evolution of convergent gene expression changes during transitions to co-sexuality in haploid sexual systems," Nature Ecology & Evolution 6 (5), 579-589 (2022).

J Gueno, M Borg, S Bourdareau, G Cossard, O Godfroy, A Lipinska, T Tirichine, JM Cock, and S Coelho, "Chromatin landscape associated with sexual differentiation in a UV sex determination system," Nucleic Acids Research 50 (6), 3307-3322 (2022).

DG Müller, E Gaschet, O Godfroy, J Gueno, G Cossard, M Kunert, AF Peters, R Westermeier, W Boland, JM Cock, AP Lipinska, and SM Coelho, "A partially sex-reversed giant kelp sheds light into the mechanisms of sexual differentiation in a UV sexual system," New Phytologist 232 (1), 252-263 (2021).

L Mignerot, K Avia, R Luthringer, AP Lipinska, AF Peters, JM Cock, and SM Coelho, "A key role for sex chromosomes in the regulation of parthenogenesis in the brown alga Ectocarpus," PLoS Genetics 15 (6), e1008211 (2019).

AP Lipinska, ML Serrano-Serrano, A Cormier, AF Peters, K Kogame, JM Cock, and SM Coelho, "Rapid turnover of life-cycle-related genes in the brown algae," Genome Biology 20 (1), 35 (2019).

AP Lipinska, ML Serrano-Serrano, A Cormier, AF Peters, K Kogame, JM Cock, and SM Coelho, "Correction to: Rapid turnover of life-cycle-related genes in the brown algae," Genome Biology 20 (1), 44 (2019).

A Arun, SM Coelho, AF Peters, S Bourdareau, L Pérès, D Scornet, M Strittmatter, AP Lipinska, K Avia, N Macaisne, C Troadec, A Bendahmane, and JM Cock, "Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae," eLife 8, e43101 (2019).

SM Coelho, J Gueno, AP Lipinska, JM Cock, and JG Umen, "UV Chromosomes and Haploid Sexual Systems," Trends in Plant Science 23 (9), 794-807 (2018).

K Avia, AP Lipinska, L Mignerot, AE Montecinos, M Jamy, S Ahmed, M Valero, AF Peters, JM Cock, D Roze, and SM Coelho, "Genetic Diversity in the UV Sex Chromosomes of the Brown Alga Ectocarpus," Genes 9 (6), 286 (2018).

O Godfroy, T Uji, C Nagasato, AP Lipinska, D Scornet, AF Peters, K Avia, S Colin, L Mignerot, T Motomura, JM Cock, and SM Coelho, "DISTAG/TBCCd1 Is Required for Basal Cell Fate Determination in Ectocarpus," Plant Cell 29 (12), 3102-3122 (2017).

AP Lipinska, NRT Toda, S Heesch, AF Peters, JM Cock, and SM Coelho, "Multiple gene movements into and out of haploid sex chromosomes," Genome Biology 18, 104 (2017).

A Cormier, K Avia, L Sterck, T Derrien, V Wucher, G Andres, M Monsoor, O Dodfroy, A Lipinska, M-M Perrineau, Y Van De Peer, C Hitte, E Corre, SM Coelho, and JM Cock, "Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus," New Phytologist 214 (1), 219-232 (2017).

JM Cock, F Liu, D Duan, S Bourdareau, AP Lipinska, SM Coelho, and JF Tarver, "Rapid Evolution of microRNA Loci in the Brown Algae," Genome Biology and Evolution 9 (3), 740-749 (2017).

N Macaisne, F Liu, D Scornet, AF Peters, A Lipinska, M-M Perrineau, A Henry, M Strittmatter, SM Coelho, and JM Cock, "The Ectocarpus IMMEDIATE UPRIGHT gene encodes a member of a novel family of cysteine-rich proteins with an unusual distribution across the eukaryotes," Development 144 (3), 409-418 (2017).

AP Lipinska, EJN Van Damme, and O De Clerck, "Molecular evolution of candidate male reproductive genes in the brown algal model Ectocarpus," BMC Evolutionary Biology 16, 5 (2016).