Publications of E Bornberg-Bauer

Journal Article (18)

1.
Journal Article
Grandchamp, A.; Czuppon, P.; Bornberg-Bauer, E.: Quantification and modeling of turnover dynamics of de novo transcripts in Drosophila melanogaster. Nucleic Acids Research 52 (1), pp. 274 - 287 (2024)
2.
Journal Article
Aubel, M.; Eicholt, L.; Bornberg-Bauer, E.; Lange, A.: Wie de novo entstandene Proteine im Labor exprimiert werden können. Biospektrum 29 (6), pp. 629 - 632 (2023)
3.
Journal Article
Fouks, B.; Harrison, M.; Mikhailova, A.; Marchal, E.; English, S.; Carruthers, M.; Jennings, E.; Pippel, M.; Attardo, G.; Benoit, B. et al.; Bornberg-Bauer, E.; Tobe, S.: Live-bearing cockroach genome reveals convergent evolutionary mechanisms linked to viviparity in insects and beyond. iScience 26 (10), 107832 (2023)
4.
Journal Article
Grandchamp, A.; Kühl, L.; Lebherz, M.; Brüggemann, K.; Parsch, J.; Bornberg-Bauer, E.: Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster. Genome Research 33 (6), pp. 872 - 890 (2023)
5.
Journal Article
Heames, B.; Buchel, F.; Aubel, M.; Tretyachenko, V.; Loginov, D.; Novák, P.; Lange, A.; Bornberg-Bauer, E.; Hlouchová, K.: Experimental characterization of de novo proteins and their unevolved random-sequence counterparts. Nature Ecology & Evolution 7 (4), pp. 570 - 580 (2023)
6.
Journal Article
Iyengar, B.; Bornberg-Bauer, E.: Neutral models of de novo gene emergence suggest that gene evolution has a preferred trajectory. Molecular Biology and Evolution 40 (4), msad079 (2023)
7.
Journal Article
Aubel, M.; Eicholt, L.; Bornberg-Bauer, E.: Assessing structure and disorder prediction tools for de novo emerged proteins in the age of machine learning. F1000Research (2023)
8.
Journal Article
Aubel, M.; Bornberg-Bauer, E.: Introducing creative destruction as a mechanism in protein evolution. Proceedings of the National Academy of Sciences of the United States of America 120 (6), e2220460120 (2023)
9.
Journal Article
Coban, A.; Bornberg-Bauer, E.; Kemena, C.: Domain Evolution of Vertebrate Blood Coagulation Cascade Proteins. Journal of Molecular Evolution: the Journal of the International Society of Molecular Evolution 90 (6), pp. 418 - 428 (2022)
10.
Journal Article
Eenink, B.; Kaminski, T.; Bornberg-Bauer, E.; Jose, J.; Hollfelder, F.; van Loo, B.: Vector redesign and in-droplet cell-growth improves enrichment and recovery in live Escherichia coli. Microbial Biotechnology 15 (11), pp. 2845 - 2853 (2022)
11.
Journal Article
Berger, J.; Legendre, F.; Zelosko, K.-M.; Harrison, M.; Grandcolas, P.; Bornberg-Bauer, E.; Fouks, B.: Eusocial Transition in Blattodea: Transposable Elements and Shifts of Gene Expression. Genes 13 (11), 1948 (2022)
12.
Journal Article
Eicholt, L.; Aubel, M.; Berk, K.; Bornberg-Bauer, E.; Lange, A.: Heterologous expression of naturally evolved putative de novo proteins with chaperones. Protein Science 31 (8), e4371 (2022)
13.
Journal Article
Grandchamp, A.; Berk, K.; Dohmen, E.; Bornberg-Bauer, E.: New Genomic Signals Underlying the Emergence of Human Proto-Genes. Genes 13 (2), 284 (2022)
14.
Journal Article
Buchholz, P.; van Loo , B.; Eenink, B.; Bornberg-Bauer, E.: Ancestral sequences of a large promiscuous enzyme family correspond to bridges in sequence space in a network representation. Interface: Journal of the Royal Society 18 (184), 20210389 (2021)
15.
Journal Article
Rivard, E.; Ludwig, A.; Patel, P.; Grandchamp, A.; Arnold, S.; Berger, A.; Scott, E.; Kelly, B.; Mascha, G.; Bornberg-Bauer, E. et al.; Findlay, G.: A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. PLoS Genetics 17 (9), e1009787 (2021)
16.
Journal Article
Harrison, M.; Jaimes Niño, L.; Almeida Rodrigues, M.; Ryll, J.; Flatt, T.; Oettler, J.; Bornberg-Bauer, E.: Gene Coexpression Network Reveals Highly Conserved, Well-Regulated Anti-Ageing Mechanisms in Old Ant Queens. Genome Biology and Evolution 13 (6), evab093 (2021)
17.
Journal Article
Thomas, G.; Dohmen, E.; Hughes, D.; Murali, S.; Poelchau, M.; Glastad, K.; Anstead, C.; Ayoub, N.; Batterham, P.; Bellair, M. et al.; Binford, G.; Chao, H.; Chen, Y.; Childers, C.; Dinh, H.; Doddapaneni, H.; Duan, J.; Dugan , S.; Espito, L.; Friedrich, M.; Garb, J.; Gasser, R.; Goodisman, M.; Gundersen-Rindal, D.; Han, Y.; Handler, A.; Hatakeyama, M.; Hering, L.; Hunter, W.; Ioannidis, P.; Jayaseelan, J.; Kalra, D.; Khila, A.; Korhonen, P.; Lee, C.; Lee, S.; Li, Y.; Lindsey, A.; Mayer, G.; McGregor, A.; McKenna, D.; Misof, B.; Munidasa, M.; Munoz-Torres, M.; Muzny, D.; Niehuis, O.; Osuji-Lacy, N.; Palli, S.; Panfilio, K.; Pechmann, M.; Perry, T.; Peters, R.; Poynton, H.; Prpic, N.; Qu, J.; Rotenberg, D.; Schal, C.; Schoville, S.; Scully, E.; Skinner, E.; Sloan, D.; Stouthamer, R.; Strand, M.; Szucsich, N.; Wijeratne, A.; Young, N.; Zattara, E.; Benoit, J.; Zdobnov, B.; Pfrender, M.; Hackett, K.; Werren, J.; Worley, K.; Gibbs, B.; Chipman, A.; Waterhouse, R.; Bornberg-Bauer, E.; Hahn, M.; Richards, S.: Gene content evolution in the arthropods. Genome Biology 21, 15 (2020)
18.
Journal Article
van Loo, B.; Schober, M.; Valkov, E.; Heberlein, M.; Bornberg-Bauer, E.; Faber, K.; Hyvönen, M.; Hollfelder, F.: Structural and Mechanistic Analysis of the Choline Sulfatase from Sinorhizobium melliloti: A Class I Sulfatase Specific for an Alkyl Sulfate Ester. Journal of Molecular Biology 430 (7), pp. 1004 - 1023 (2018)

Meeting Abstract (2)

19.
Meeting Abstract
Eicholt, L.; Middendorf, L.; Bornberg-Bauer, E.: From de novo a beginning: Identifying structures and activites of de novo proteins. In SMBE 2023, pp. 46 - 47. Society for Molecular Biology and Evolution Conference 2023 (SMBE 2023), Ferrara, Italy, July 23, 2023 - July 27, 2023. (2023)
20.
Meeting Abstract
Eicholt, L.; Lange, A.; Bornberg-Bauer, E.: De novo Proteins: Expression and Structural Analysis. In Advances in Protein Folding, Evolution and Design (APFED 2022), p. 66. Advances in Protein Folding, Evolution and Design (APFED 2022), Bayreuth, Germany, April 06, 2022 - April 08, 2022. (2022)
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