Publications of D Weigel

Becker, C.; Hagmann, J.; Müller, J.; Koenig, D.; Stegle, O.; Borgwardt, K.; Weigel, D.: Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 480 (7376), pp. 245 - 249 (2011)

Rubio-Somoza, I.; Weigel, D.; Franco-Zorilla, J.-M.; García, J.; Paz-Ares, J.: ceRNAs: miRNA target mimic mimics. Cell 147 (7), pp. 1431 - 1432 (2011)

Cao, J.; Schneeberger, K.; Ossowski, S.; Günther, T.; Bender, S.; Fitz, J.; König, D.; Lanz, C.; Stegle, O.; Lippert, C. et al.; Wang, X.; Ott, F.; Müller, J.; Alonso-Blanco, C.; Borgwardt, K.; Schmid, K.; Weigel, D.: Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nature Genetics 43 (10), pp. 956 - 963 (2011)

Guo, Y.-L.; Fitz, J.; Schneeberger, K.; Ossowski, S.; Cao, J.; Weigel, D.: Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiology 157 (2), pp. 757 - 769 (2011)

Guo, Y.-L.; Zhao, X.; Lanz, C.; Weigel, D.: Evolution of the S-locus region in Arabidopsis relatives. Plant Physiology 157 (2), pp. 937 - 946 (2011)

Davila, J.; Arrieta-Montiel, M.; Wamboldt, Y.; Cao, J.; Hagmann, J.; Shedge, V.; Xu, Y.-Z.; Weigel, D.; Mackenzie, S.: Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis. BMC Biology 9, 64 (2011)

Klein, J.; Ossowski, S.; Schneeberger, K.; Weigel, D.; Huson, D.: LOCAS: A Low Coverage Assembly Tool for Resequencing Projects. PLOS ONE 6 (8), e23455 (2011)

Willing, E.-M.; Hoffmann, M.; Klein, J.; Weigel, D.; Dreyer, C.: Paired-end RAD-seq for de novo assembly and marker design without available reference. Bioinformatics 27 (16), pp. 2187 - 2193 (2011)

Rowan, B.; Weigel, D.; Koenig, D.: Developmental genetics and new sequencing technologies: the rise of nonmodel organisms. Developmental Cell 21 (1), pp. 65 - 76 (2011)

Smith, L.; Bomblies, K.; Weigel, D.: Complex evolutionary events at a tandem cluster of Arabidopsis thaliana genes resulting in a single-locus genetic incompatibility. PLoS Genetics 7 (7), e1002164 (2011)

Salomé, P.; Bomblies, K.; Laitinen, R.; Yant, L.; Mott, R.; Weigel, D.: Genetic architecture of flowering-time variation in Arabidopsis thaliana. Genetics 188 (2), pp. 421 - 433 (2011)

Schneeberger, K.; Ossowski, S.; Ott, F.; Klein, J.; Wang, X.; Lanz, C.; Smith, L.; Cao, J.; Fitz, J.; Warthmann, N. et al.; Henz, S.; Huson, D.; Weigel, D.: Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America 108 (25), pp. 10249 - 10254 (2011)

Hu, T.; Pattyn, P.; Bakker, E.; Cao, J.; Cheng, J.-F.; Clark, R.; Fahlgren, N.; Fawcett, J.; Grimwood, J.; Gundlach, A. et al.; Haberer, D.; Hollister, J.; Ossowski, S.; Ottilar, R.; Salamov, A.; Schneeberger, K.; Spannagl, M.; Wang, X.; Yang, L.; Nasrallah, M.; Bergelson, J.; Carrington, J.; Gaut, B.; Schmutz, J.; Mayer, K.; Van de Peer, Y.; Grigoriev, I.; Nordborg, M.; Weigel, D.; Guo, Y.-L.: The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics 43 (5), pp. 476 - 481 (2011)

Rubio-Somoza, I.; Weigel, D.: MicroRNA networks and developmental plasticity in plants. Trends in Plant Science 16 (5), pp. 258 - 264 (2011)

Schneeberger, K.; Weigel, D.: Fast-forward genetics enabled by new sequencing technologies. Trends in Plant Science 16 (5), pp. 282 - 288 (2011)

Sonmez, C.; Bäurle, I.; Magusin, A.; Dreos, R.; Laubinger, S.; Weigel, D.; Dean, C.: RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription. Proceedings of the National Academy of Sciences of the United States of America 108 (20), pp. 8508 - 8513 (2011)

Fenselau de Felippes, F.; Ott, F.; Weigel, D.: Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana. Nucleic Acids Research (London) 39 (7), pp. 2880 - 2889 (2011)

Gou, J.-Y.; Felippes, F.; Liu, C.-L.; Weigel, D.; Wang, J.-W.: Negative regulation of anthocyanin biosynthesis in Arabidopsis by a miR156-targeted SPL transcription factor. Plant Cell 23 (4), pp. 1512 - 1522 (2011)

Manavella, P.; Weigel, D.; Wu, L.: Argonaute10 as a miRNA locker. Cell 145 (2), pp. 173 - 174 (2011)

Moyroud, E.; Gómez Minguet, E.; Ott, F.; Yant, L.; Posé, D.; Monniaux, M.; Blanchet, S.; Bastien, O.; Thévenon, E.; Weigel, D. et al.; Schmid, M.; Parcy, F.: Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor. Plant Cell 23 (4), pp. 1293 - 1306 (2011)